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The Open Force Field Initiative: Open Software and Open Science for Molecular Modeling.
Wang, Lily; Behara, Pavan Kumar; Thompson, Matthew W; Gokey, Trevor; Wang, Yuanqing; Wagner, Jeffrey R; Cole, Daniel J; Gilson, Michael K; Shirts, Michael R; Mobley, David L.
Afiliación
  • Wang L; Open Force Field, Open Molecular Software Foundation, Davis, California 95616, United States.
  • Behara PK; Center for Neurotherapeutics, University of California, Irvine, California 92697, United States.
  • Thompson MW; Open Force Field, Open Molecular Software Foundation, Davis, California 95616, United States.
  • Gokey T; Department of Chemistry, University of California, Irvine, California 92697, United States.
  • Wang Y; Simons Center for Computational Physical Chemistry and Center for Data Science, New York, New York 10004, United States.
  • Wagner JR; Open Force Field, Open Molecular Software Foundation, Davis, California 95616, United States.
  • Cole DJ; School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne NE1 7RU, United Kingdom.
  • Gilson MK; Skaggs School of Pharmacy and Pharmaceutical Sciences, The University of California at San Diego, La Jolla, California 92093, United States.
  • Shirts MR; Department of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, Colorado 80305, United States.
  • Mobley DL; Department of Chemistry, University of California, Irvine, California 92697, United States.
J Phys Chem B ; 128(29): 7043-7067, 2024 Jul 25.
Article en En | MEDLINE | ID: mdl-38989715
ABSTRACT
Force fields are a key component of physics-based molecular modeling, describing the energies and forces in a molecular system as a function of the positions of the atoms and molecules involved. Here, we provide a review and scientific status report on the work of the Open Force Field (OpenFF) Initiative, which focuses on the science, infrastructure and data required to build the next generation of biomolecular force fields. We introduce the OpenFF Initiative and the related OpenFF Consortium, describe its approach to force field development and software, and discuss accomplishments to date as well as future plans. OpenFF releases both software and data under open and permissive licensing agreements to enable rapid application, validation, extension, and modification of its force fields and software tools. We discuss lessons learned to date in this new approach to force field development. We also highlight ways that other force field researchers can get involved, as well as some recent successes of outside researchers taking advantage of OpenFF tools and data.

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: J Phys Chem B Asunto de la revista: QUIMICA Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Estados Unidos

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: J Phys Chem B Asunto de la revista: QUIMICA Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Estados Unidos