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HmtVar: a new resource for human mitochondrial variations and pathogenicity data.
Preste, Roberto; Vitale, Ornella; Clima, Rosanna; Gasparre, Giuseppe; Attimonelli, Marcella.
Afiliação
  • Preste R; Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari, Bari 70126, Italy.
  • Vitale O; Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari, Bari 70126, Italy.
  • Clima R; Department of Medical and Surgical Sciences - DIMEC, Medical Genetics Unit, University of Bologna, Bologna 40126, Italy.
  • Gasparre G; Department of Medical and Surgical Sciences - DIMEC, Medical Genetics Unit, University of Bologna, Bologna 40126, Italy.
  • Attimonelli M; Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari, Bari 70126, Italy.
Nucleic Acids Res ; 47(D1): D1202-D1210, 2019 01 08.
Article em En | MEDLINE | ID: mdl-30371888
Interest in human mitochondrial genetic data is constantly increasing among both clinicians and researchers, due to the involvement of mitochondrial DNA (mtDNA) in a number of physiological and pathological processes. Thanks to new sequencing technologies and modern databases, the large amount of information on mtDNA variability may be exploited to gain insights into the relationship between mtDNA variants, phenotypes and diseases. To facilitate this process, we have developed the HmtVar resource, a variant-focused database that allows the exploration of a dataset of over 40 000 human mitochondrial variants. Mitochondrial variation data, initially gathered from the HmtDB platform, are integrated with in-house pathogenicity assessments based on various evaluation criteria and with a set of additional annotations from third-party resources. The result is a comprehensive collection of information of crucial importance for human mitochondrial variation studies and investigation of common and rare diseases in which the mitochondrion may be involved. HmtVar is accessible at https://www.hmtvar.uniba.it and data may be retrieved using either a web interface through the Query page or a state-of-the-art API for programmatic access.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Variação Genética / DNA Mitocondrial / Biologia Computacional / Doenças Mitocondriais / Bases de Dados Genéticas / Genoma Mitocondrial Limite: Humans Idioma: En Revista: Nucleic Acids Res Ano de publicação: 2019 Tipo de documento: Article País de afiliação: Itália País de publicação: Reino Unido

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Variação Genética / DNA Mitocondrial / Biologia Computacional / Doenças Mitocondriais / Bases de Dados Genéticas / Genoma Mitocondrial Limite: Humans Idioma: En Revista: Nucleic Acids Res Ano de publicação: 2019 Tipo de documento: Article País de afiliação: Itália País de publicação: Reino Unido