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The new Ribopeaks (RPK-II): Updated and enlarged tool for bacterial classification based on r-protein m/z data.
da Silva, Renann Rodrigues; Tomachewski, Douglas; Karas, Laís Priscila; Galvão, Carolina Weigert; da Rocha, José Carlos Ferreira; Miyoshi, Edmar; Etto, Rafael Mazer.
Afiliação
  • da Silva RR; Postgraduate Program in Agronomy, State University of Ponta Grossa, Paraná, Brazil; Microbial Molecular Biology Laboratory, State University of Ponta Grossa, Paraná, Brazil.
  • Tomachewski D; Postgraduate Program in Agronomy, State University of Ponta Grossa, Paraná, Brazil; Microbial Molecular Biology Laboratory, State University of Ponta Grossa, Paraná, Brazil.
  • Karas LP; Microbial Molecular Biology Laboratory, State University of Ponta Grossa, Paraná, Brazil; Postgraduate Program in Biomedical Sciences, State University of Ponta Grossa, Paraná, Brazil.
  • Galvão CW; Postgraduate Program in Agronomy, State University of Ponta Grossa, Paraná, Brazil; Microbial Molecular Biology Laboratory, State University of Ponta Grossa, Paraná, Brazil.
  • da Rocha JCF; Microbial Molecular Biology Laboratory, State University of Ponta Grossa, Paraná, Brazil; Postgraduate Program in Applied Computing, State University of Ponta Grossa, Paraná, Brazil.
  • Miyoshi E; Microbial Molecular Biology Laboratory, State University of Ponta Grossa, Paraná, Brazil; Postgraduate Program in Biomedical Sciences, State University of Ponta Grossa, Paraná, Brazil.
  • Etto RM; Postgraduate Program in Agronomy, State University of Ponta Grossa, Paraná, Brazil; Microbial Molecular Biology Laboratory, State University of Ponta Grossa, Paraná, Brazil; Postgraduate Program in Applied Computing, State University of Ponta Grossa, Paraná, Brazil. Electronic address: mazeretto@uep
J Proteomics ; 289: 105008, 2023 10 30.
Article em En | MEDLINE | ID: mdl-37775078
Ribopeaks is a rapid, sensitive, and economic web tool for bacterial identification based on m/z data from MALDI-TOF MS. To provide greater accuracy and robustness in the Ribopeaks analyzes we present an updated bacterial identification tool version, called Ribopeaks II (RPK-II). RPK-II contains a larger database, with r-protein data from fully sequenced bacterial genomes and optimized algorithms. Furthermore, this new version provides additional information about the identified bacterium, regarding antibiotic resistance.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Bactérias / Algoritmos Idioma: En Revista: J Proteomics Assunto da revista: BIOQUIMICA Ano de publicação: 2023 Tipo de documento: Article País de afiliação: Brasil País de publicação: Holanda

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Bactérias / Algoritmos Idioma: En Revista: J Proteomics Assunto da revista: BIOQUIMICA Ano de publicação: 2023 Tipo de documento: Article País de afiliação: Brasil País de publicação: Holanda