Your browser doesn't support javascript.
loading
Multiomic Immunophenotyping of COVID-19 Patients Reveals Early Infection Trajectories
Yapeng Su; Daniel Chen; Christopher Lausted; Dan Yuan; Jongchan Choi; Cheng Dai; Valentin Voillet; Kelsey Scherler; Pamela Troisch; Venkata R Duvvuri; Priyanka Baloni; Guangrong Qin; Brett Smith; Sergey Kornilov; Clifford Rostomily; Alex Xu; Jing Li; Shen Dong; Jing Zhou; Kim Murray; Rick Edmark; Sunga Hong; Lesley Jones; Yong Zhou; Ryan Roper; Sean Mackay; Christopher R Dale; Julie A Wallick; Heather A Algren; Zager A Michael; Andrew Magis; Wei Wei; Nathan D Price; Sui Huang; Naeha Subramanian; Kai Wang; Jennifer Hadlock; Leroy Hood; Jeffrey A. Bluestone; Lewis L Lanier; Phil Greenberg; Raphael Gottardo; Mark M. Davis; Jason D. Goldman; James R. Heath; - the ISB-Swedish COVID19 Biobanking Unit.
Afiliação
  • Yapeng Su; Institute for Systems Biology
  • Daniel Chen; Institute for Systems Biology
  • Christopher Lausted; Institute for Systems Biology
  • Dan Yuan; Institute for Systems Biology; Department of Bioengineering, University of Washington.
  • Jongchan Choi; Institute for Systems Biology
  • Cheng Dai; Institute for Systems Biology
  • Valentin Voillet; Cape Town HVTN Immunology Laboratory, Hutchinson Centre Research Institute of South Africa, NPC (HCRISA); Vaccine and Infectious Disease Division, Fred Hutchins
  • Kelsey Scherler; Institute for Systems Biology
  • Pamela Troisch; Institute for Systems Biology
  • Venkata R Duvvuri; Institute for Systems Biology
  • Priyanka Baloni; Institute for Systems Biology
  • Guangrong Qin; Institute for Systems Biology
  • Brett Smith; Institute for Systems Biology
  • Sergey Kornilov; Institute for Systems Biology
  • Clifford Rostomily; Institute for Systems Biology
  • Alex Xu; Institute for Systems Biology
  • Jing Li; Institute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford
  • Shen Dong; Diabetes Center, University of California, San Francisco.
  • Jing Zhou; Isoplexis Corporation
  • Kim Murray; Institute for Systems Biology
  • Rick Edmark; Institute for Systems Biology
  • Sunga Hong; Institute for Systems Biology
  • Lesley Jones; Institute for Systems Biology
  • Yong Zhou; Institute for Systems Biology
  • Ryan Roper; Institute for Systems Biology
  • Sean Mackay; Isoplexis Corporation
  • Christopher R Dale; Swedish Center for Research and Innovation, Swedish Medical Center; Providence St. Joseph Health.
  • Julie A Wallick; Swedish Center for Research and Innovation, Swedish Medical Center; Providence St. Joseph Health.
  • Heather A Algren; Swedish Center for Research and Innovation, Swedish Medical Center; Providence St. Joseph Health.
  • Zager A Michael; Center for Data Visualization, Fred Hutchinson Cancer Research Center,
  • Andrew Magis; Institute for Systems Biology
  • Wei Wei; Institute for Systems Biology
  • Nathan D Price; Institute for Systems Biology
  • Sui Huang; Institute for Systems Biology
  • Naeha Subramanian; Institute for Systems Biology
  • Kai Wang; Institute for Systems Biology
  • Jennifer Hadlock; Institute for Systems Biology
  • Leroy Hood; Institute for Systems Biology
  • Jeffrey A. Bluestone; Diabetes Center, University of California, San Francisco
  • Lewis L Lanier; Department of Microbiology and Immunology, University of California, San Francisco; and Parker Institute for Cancer Immunotherapy
  • Phil Greenberg; Division of Clinical Research, Fred Hutchinson Cancer Research Center; Department of Immunology, University of Washington
  • Raphael Gottardo; Vaccine and Infectious Disease Division,and Division of Public Health Sciences, Fred Hutchinson Cancer Research Center; Department of Statistics, University of
  • Mark M. Davis; Institute for Immunity, Transplantation and Infection, Stanford University School of Medicine; Department of Microbiology and Immunology, Stanford University Sc
  • Jason D. Goldman; Swedish Center for Research and Innovation, Swedish Medical Center; Providence St. Joseph Health; Division of Allergy & Infectious Diseases, University of Washi
  • James R. Heath; Institute for Systems Biology
  • - the ISB-Swedish COVID19 Biobanking Unit; -
Preprint em Inglês | bioRxiv | ID: ppbiorxiv-224063
ABSTRACT
Host immune responses play central roles in controlling SARS-CoV2 infection, yet remain incompletely characterized and understood. Here, we present a comprehensive immune response map spanning 454 proteins and 847 metabolites in plasma integrated with single-cell multi-omic assays of PBMCs in which whole transcriptome, 192 surface proteins, and T and B cell receptor sequence were co-analyzed within the context of clinical measures from 50 COVID19 patient samples. Our study reveals novel cellular subpopulations, such as proliferative exhausted CD8+ and CD4+ T cells, and cytotoxic CD4+ T cells, that may be features of severe COVID-19 infection. We condensed over 1 million immune features into a single immune response axis that independently aligns with many clinical features and is also strongly associated with disease severity. Our study represents an important resource towards understanding the heterogeneous immune responses of COVID-19 patients and may provide key information for informing therapeutic development.
Licença
cc_no
Texto completo: Disponível Coleções: Preprints Base de dados: bioRxiv Tipo de estudo: Estudo prognóstico Idioma: Inglês Ano de publicação: 2020 Tipo de documento: Preprint
Texto completo: Disponível Coleções: Preprints Base de dados: bioRxiv Tipo de estudo: Estudo prognóstico Idioma: Inglês Ano de publicação: 2020 Tipo de documento: Preprint
...