GSnet: An Integrated Tool for Gene Set Analysis and Visualization
Genomics & Informatics
; : 133-136, 2007.
Artigo
em Inglês
| WPRIM (Pacífico Ocidental)
| ID: wpr-86061
Biblioteca responsável:
WPRO
ABSTRACT
The Gene Set network viewer (GSnet) visualizes the functional enrichment of a given gene set with a protein interaction network and is implemented as a plug-in for the Cytoscape platform. The functional enrichment of a given gene set is calculated using a hypergeometric test based on the Gene Ontology annotation. The protein interaction network is estimated using public data. Set operations allow a complex protein interaction network to be decomposed into a functionally-enriched module of interest. GSnet provides a new framework for gene set analysis by integrating a priori knowledge of a biological network with functional enrichment analysis.
Texto completo:
Disponível
Base de dados:
WPRIM (Pacífico Ocidental)
Assunto principal:
Análise em Microsséries
/
Mapas de Interação de Proteínas
/
Ontologia Genética
Idioma:
Inglês
Revista:
Genomics & Informatics
Ano de publicação:
2007
Tipo de documento:
Artigo