Using the PubAnnotation ecosystem to perform agile text mining on Genomics & Informatics: a tutorial review
Genomics & Informatics
; : e13-2020.
Artigo
em Inglês
| WPRIM (Pacífico Ocidental)
| ID: wpr-890682
Biblioteca responsável:
WPRO
ABSTRACT
The prototype version of the full-text corpus of Genomics & Informatics has recently been archived in a GitHub repository. The full-text publications of volumes 10 through 17 are also directly downloadable from PubMed Central (PMC) as XML files. During the Biomedical Linked Annotation Hackathon 6 (BLAH6), we experimented with converting, annotating, and updating 301 PMC full-text articles of Genomics & Informatics using PubAnnotation, a system that provides a convenient way to add PMC publications based on PMCID. Thus, this review aims to provide a tutorial overview of practicing the iterative task of named entity recognition with the PubAnnotation/PubDictionaries/TextAE ecosystem. We also describe developing a conversion tool between the Genia tagger output and the JSON format of PubAnnotation during the hackathon.
Texto completo:
Disponível
Base de dados:
WPRIM (Pacífico Ocidental)
Idioma:
Inglês
Revista:
Genomics & Informatics
Ano de publicação:
2020
Tipo de documento:
Artigo