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1.
EJMM-Egyptian Journal of Medical Microbiology [The]. 2013; 22 (3): 27-34
in English | IMEMR | ID: emr-188976

ABSTRACT

Multidrug resistant tuberculosis [MDR-TB], which is tuberculosis [TB] resistant to at least isoniazid and rifampicin, is a major threat to TB control worldwide. Early detection of MDR-TB allows initiation of an appropriate treatment. Diagnosis of MDR-TB requires microbiologic evaluation of the Mycobacterium tuberculosis isolates drug susceptibility. The microscopic observation drug susceptibility [MODS] is a relatively low-cost, simple liquid culture method that relies on the microscopic detection of cording growth that is characteristic of Mycobacterium tuberculosis. We undertook a prospective study to evaluate the performance of MODS. Testing for the direct detection of M. tuberculosis drug resistance in specimen from patients with suspected pulmonary TB at risk for drug resistance. The study was carried out on 150 individuals. Samples at risk for drug resistance were cultured positive for M. tuberculosis by both MODS and LJ. methods. By the comparator LJ. testing method, 57 isolates [38.0%] were resistant to both INH and RIF, 19 [12.7%] were resistant to INH alone, 4 [2.7%] were RIF monoresistant, and 70 [46.6%] were susceptible to both INH and RIF. The performance parameters of the MODS assay are shown. MODS test results are shown for undiluted MODS inocula and for inocula diluted 1:10. The MODS assay indicated some specimens to be resistant than the comparator method indicated to be susceptible. This trend was slightly more marked when undiluted inocula were used for MODS. The time interval of 14 days was chosen as the susceptibility or resistance status indicated by the MODS assay is stable for at least 2 weeks after the detection of growth and because this strategy optimized efficiency by eliminating the need for daily microscopic examination of all drug-containing wells. Median times to the availability of susceptibility results were 21 days [interquartile range, 17 to 24 days] for the MODS method and 49 days [interquartile range, 46 to 55 days] for the LJ. method [P, <0.001 by paired t tes]


The MODS assay provides low-cost, safe and highly sensitive detection of TB greatly faster than existing gold standards and automated methods with concurrent highly accurate identification ofmultidrug resistant [MDR] strains

2.
EJMM-Egyptian Journal of Medical Microbiology [The]. 2013; 22 (3): 63-68
in English | IMEMR | ID: emr-188980

ABSTRACT

Widespread use of ciprofloxacin in treatment of urinary tract infection [UTI] led to increased level of resistance in clinical isolates of E. coli. The aim of this study was to investigate the molecular characterization of ciprofloxacin resistant E.coli isolates from community acquired urinary tract infections.. E-coli strains were isolated from urine samples [E. coli represented 70% of isolates [21/30] and minimal inhibitory concentration [MIC] of Ciprofloxacin [CFX] of E. coli was measured [Resistant strains of E. coli had MICs of ciprofloxacin ranging from 4 to >32 mg per liter]. CFX resistant E. coli strains were subjected to PCR to amplify gyrA and parC genes of Quinolones resistance determining region of E. coli. DNA sequencing of amplified product was carried out and the molecular characterization of E. coli resistant to CFX were analysed [All resistant E. coli isolates contained Ser83+/-Leu and Asn87+/-Asp mutations in gyrA and a Ser83-+/-Ile mutation in parC; two isolates also contained a Glu84+/-Val mutation in parC.

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