First report the role of benthic macroinvertebrates as preys for native fish in Toltén river (38° S, Araucania region Chile) / Primeiro relate o papel dos macroinvertebrados como presas de peixes nativos no rio Toltén (38° S, região da Araucanía, Chile)

Abstract The Toltén river is located in the 137 years old Araucania region, Chile (38° S), and is characterized by low alterations through human interference due agriculture and towns in its surrounding basin, the presence of native fishes and salmonids, and by its lake effluent regime originated from Villarrica lake. The aim of the present study was to make a review of ecological role of the benthic inland water macroinvertebrates as preys for native fishes of the River Toltén, in order to understand their importance in the ecosystem of the river. The literature revealed that the main prey for native fishes are Chironomidae larvae, nevertheless there are not specific reports for Tolten river. The exposed results are similar with similar native species for Patagonia, and these native species would have prey for introduced salmonids, or these species would have prey competition with introduced salmonids in according to the literature descriptions for Argentinean and Chilean Patagonia.

Resumo O rio Toltén está localizado na região da Araucanía, com 137 anos de idade, Chile (38° S), e é caracterizado por baixas alterações por interferência humana devido à agricultura e cidades da bacia circundante, pela presença de salmonídeos e pelo regime de efluentes dos lagos. do lago Villarrica. O objetivo do presente estudo foi fazer uma revisão do papel ecológico dos macroinvertebrados bentônicos de águas interiores do rio Toltén, a fim de entender sua importância no ecossistema do rio. A literatura revelou que as principais presas de peixes nativos são as larvas de Chironomidae, no entanto, não há relatos específicos para o rio Tolten. Os resultados expostos são semelhantes com espécies nativas semelhantes para a Patagônia, e essas espécies nativas teriam presa por salmonídeos introduzidos, ou essas espécies teriam competição de presas com salmonídeos introduzidos de acordo com as descrições da literatura para a Patagônia Argentina e Chilena.

First study of food webs in a large glacial river: the trophic role of invasive trout

The aim of this study was to determine the food webs structure of a large Patagonian river in two river sections (Upstream and Midstream) and to evaluate isotopic overlap between native and introduced species. We used stable isotope analyses of δ15N and δ13C and stomach content. The Upstream section had a more complex food webs structure with a greater richness of macroinvertebrates and fish species than Midstream. Upstream basal resources were dominated by filamentous algae. Lake Trout were found to have a higher trophic position than all other fish species in that area although, the most abundant fish species, were Rainbow Trout. Depending on the life stage, Rainbow Trout shifted from prey to competitor/predator. In the Midstream section, the base of the food webs was dominated by coarse particulate organic matter, and adult Rainbow Trout had the highest trophic level. Isotopic values changed among macroinvertebrates and fish for both areas. The two most abundant native and invasive species — Puyen and Rainbow Trout — showed an isotopic separation in Midstream but did not in Upstream areas. The presence of invasive fish that occupy top trophic levels can have a significant impact on native fish populations that have great ecological importance in the region.(AU)

El objetivo de este estudio fue determinar la estructura trófica de un gran río de la Patagonia en dos secciones (río arriba y medio) y evaluar la superposición isotópica entre especies nativas e introducidas. Utilizamos análisis de isótopos estables δ15N y δ13C y contenido estomacal. La sección río arriba tuvo una estructura de trama trófica más compleja, con mayor riqueza de macroinvertebrados y peces respecto de la sección media. Los recursos basales dominantes río arriba fueron las algas filamentosas. En esta área, la trucha de lago tuvo la posición trófica más alta entre los peces, aunque, las especies de peces más abundantes fueron las truchas arcoiris. Dependiendo del estadio, la trucha arcoiris cambió su rol de presa a competidor/depredador. En la sección media del río, la base de la trama trófica estuvo dominada por materia orgánica particulada gruesa y la trucha arcoíris adulta fue el depredador tope. Los valores isotópicos variaron entre zonas para invetebrados y peces. Las dos especies nativas e invasoras más abundantes, Puyen y trucha arcoiris, mostraron una separación isotópica en la sección media, pero no en secciones de río arriba. La presencia de peces invasores que ocupan una posición tope en los niveles tróficos puede tener un impacto significativo sobre las poblaciones de peces nativos de gran importancia ecológica en la región.(AU)

Draft genomes and reference transcriptomes extend the coding potential of the fish pathogen Piscirickettsia salmonis

Background: Draft and complete genome sequences from bacteria are key tools to understand genetic determinants involved in pathogenesis in several disease models. Piscirickettsia salmonis is a Gram-negative bacterium responsible for the Salmon Rickettsial Syndrome (SRS), a bacterial disease that threatens the sustainability of the Chilean salmon industry. In previous reports, complete and draft genome sequences have been generated and annotated. However, the lack of transcriptome data underestimates the genetic potential, does not provide information about transcriptional units and contributes to disseminate annotation errors. Results: Here we present the draft genome and transcriptome sequences of four P. salmonis strains. We have identified the transcriptional architecture of previously characterized virulence factors and trait-specific genes associated to cation uptake, metal efflux, antibiotic resistance, secretion systems and other virulence factors. Conclusions: This data has provided a refined genome annotation and also new insights on the transcriptional structures and coding potential of this fish pathogen.

Inter-laboratory ring trial to evaluate real-time reverse transcription polymerase chain reaction methods used for detection of infectious pancreatic necrosis virus in Chile

Background: Infectious Pancreatic Necrosis Virus (IPNV) is the etiological agent of a highly contagious disease that affects salmonids. In Chile, the second worldwide salmon producer, IPNV causes great economic loss and is one of the most frequently detected pathogens. Due to its high level of persistence and the lack of information about the efficiency of its diagnostic techniques, the National Reference Laboratory (NRL) for IPNV in Chile performed the first inter-laboratory ring trial, to evaluate the sensitivity, specificity and repeatability of the qRT-PCR detection methods used in the country. Results: Results showed 100% in sensitivity and specificity in most of the laboratories. Only three of the twelve participant laboratories presented problems in sensitivity and one in specificity. Problems in specificity (false positives) were most likely caused by cross contamination of the samples, while errors in sensitivity (false negatives) were due to detection problems of the least concentrated viral sample. Regarding repeatability, many of the laboratories presented great dispersion of the results (Ct values) for replicate samples over the three days of the trial. Moreover, large differences in the Ct values for each sample were detected among all the laboratories. Conclusions: Overall, the ring trial showed high values of sensitivity and specificity, with some problems of repeatability and inter-laboratory variability. This last issue needs to be addressed in order to allow harmonized diagnostic of IPNV within the country. We recommend the use of the NRL methods as validated and reliable qRT-PCR protocols for the detection of IPNV.

First report the role of benthic macroinvertebrates as preys for native fish in Toltén river (38° S, Araucania region Chile)

Abstract The Toltén river is located in the 137 years old Araucania region, Chile (38° S), and is characterized by low alterations through human interference due agriculture and towns in its surrounding basin, the presence of native fishes and salmonids, and by its lake effluent regime originated from Villarrica lake. The aim of the present study was to make a review of ecological role of the benthic inland water macroinvertebrates as preys for native fishes of the River Toltén, in order to understand their importance in the ecosystem of the river. The literature revealed that the main prey for native fishes are Chironomidae larvae, nevertheless there are not specific reports for Tolten river. The exposed results are similar with similar native species for Patagonia, and these native species would have prey for introduced salmonids, or these species would have prey competition with introduced salmonids in according to the literature descriptions for Argentinean and Chilean Patagonia.

Resumo O rio Toltén está localizado na região da Araucanía, com 137 anos de idade, Chile (38° S), e é caracterizado por baixas alterações por interferência humana devido à agricultura e cidades da bacia circundante, pela presença de salmonídeos e pelo regime de efluentes dos lagos. do lago Villarrica. O objetivo do presente estudo foi fazer uma revisão do papel ecológico dos macroinvertebrados bentônicos de águas interiores do rio Toltén, a fim de entender sua importância no ecossistema do rio. A literatura revelou que as principais presas de peixes nativos são as larvas de Chironomidae, no entanto, não há relatos específicos para o rio Tolten. Os resultados expostos são semelhantes com espécies nativas semelhantes para a Patagônia, e essas espécies nativas teriam presa por salmonídeos introduzidos, ou essas espécies teriam competição de presas com salmonídeos introduzidos de acordo com as descrições da literatura para a Patagônia Argentina e Chilena.

Deformación de branquias en salmónidos: análisis macroscópico, histológico, ultraestructural y de elementos / Gill deformation in salmonids: macroscopic, histological, ultrastructural and elements analysis

Las branquias son los órganos destinados al proceso de respiración en los peces, estas están consideradas, entre las estructuras más delicadas del cuerpo de los teleósteos ya que están expuestas a sufrir daños de cualquier agente irritante, los cuales constituyen la causa más frecuente y significativa de sus cambios patológicos. Los objetivos del presente estudio son caracterizar las alteraciones branquiales desde los puntos de vista anatómico, histológico, además, determinar niveles de Ca, P y Zn del tejido óseo de la columna vertebral y cráneo de salmones afectados. Se utilizaron 47 salmones, divididos en dos grupos: control y con deformaciones, a los cuales se les realizaron análisis macroscópico, histológico, ultraestructural y de elementos. Se observaron alteraciones tanto en el contexto anatómico como histológico, así como gran presencia de bacterias y hongos que afectaban principalmente al primer arco, pudiendo concluir que los peces tendrían una susceptibilidad génica a la deformación branquial.

Gills act as the respiratory organ in the respiration process in fish. They are considered among the most delicate body structures of teleost fish as they are subject to damage from any irritant, which are the most frequent and significant causes of their pathological changes. The objective of this study is to characterize gill alterations from the anatomical and histological standpoint, and to determine levels of Ca, P and Zn in bone tissue of the spine and skull of affected salmon. For purposes of this study 47 salmon were used in two groups: control and deformation, subjected to complete histological, ultrastructural and element inspection. Abnormalities were observed in both the anatomical and histological context and extensive presence of bacteria and fungi affecting mainly the first arc were found. Therefore, we can conclude that these fish have a genetic susceptibility to gill deformation.