Análisis de secuencias de moléculas de Taenia solium procesadas post-transcripcionalmente mediante trans splicing / Sequences analysis of molecules of Taenia solium post-transcriptionally processed by trans-splicing

La neurocisticercosis es una enfermedad neurológica causada por la presencia de cisticercos de Taenia solium en el sistema nervioso central. La clonación de genes del parásito es importante para la identificación y estudio de moléculas claves en la biología del parásito, en diagnóstico, protección y en las relaciones parásito-hospedador. En T. solium, ocurre un mecanismo alternativo en el procesamiento de algunos ARNm, denominado trans-splicing, en el cual una pequeña molécula de ARN (Spliced Leader, SL) es añadida al extremo 5´ de una molécula de pre-ARNm, formando diferentes ARNm maduros que contienen un extremo 5´ común. El objetivo de este trabajó fue realizar el análisis de las secuencias de algunas moléculas que utilizan este procesamiento, para conocer mejor este mecanismo en T. solium. Para ello, se realizó un cribado mediante PCR de genotecas de expresión de cisticerco de T. solium utilizando como cebador directo SL y como reverso ZAP-3´UP, oligonucleótido que hibrida con la secuencia del vector. Se obtuvieron diferentes ADN complementarios (ADNc), que fueron clonados en el plásmido pGEM-T-easy, secuenciados y comparados con las bases de datos (GenBank). Un total de 14 moléculas diferentes fueron obtenidas, las cuales muestran similitud principalmente con proteínas de T. solium, Echinococcus sp. e Hymenolepis sp. Se obtuvieron transcriptos completos que codifican una variedad de proteínas que forman parte de la biología propia de organismos vivos, tales como; enzimas, transportadores, proteínas estructurales, entre otras. Aunque no fue posible determinar si existen grupos específicos de ADNc (con funciones comunes), escogidos para llevar a cabo esta modificación post-transcripcional, se pudo observar que el proceso de trans-splicing ocurre en una gran variedad de ARN que codifican diferentes proteínas de importancia biológica para T. solium.

Neurocysticercosis is a neurological disease caused by the presence of Taenia solium cysticerci in the central nervous system. T. solium uses an alternative mechanism for processing some mRNAs, known as trans-splicing, in which a small RNA molecule (Spliced Leader, SL) is added to the 5' end, of one pre-mRNA molecule, leading to the formation of different mature mRNAs that all contain a common 5' end. The aim of this study was to analyze the sequences of some of the molecules that undergo this type of post-transcriptional processing in order to learn more about this mechanism in T. solium. Expression libraries of T. solium cysticerci were screened using PCR with SL as the forward primer and ZAP 3' UP, an oligonucleotide that hybridizes to the vector sequence, as the reverse primer. Different cDNAs were obtained which were cloned in the pGEM-T-easy plasmid, sequenced and then compared with sequences in databases (GenBank). A total of 14 different molecules showing similarities to T. solium, Echinococcus sp. and Hymenolepis sp. proteins were obtained. Complete transcripts encoding a variety of proteins that are part of the biology of living organisms, such as enzymes, transporters and structural proteins, were also identified. Although we could not determine whether specific cDNA groups (with common functions) are selected to carry out this post-transcriptional modification, we were able to observe that the process of trans-splicing occurs in a variety of RNAs that code for several proteins biologically important for T. solium.

A directed approach for the identification of transcripts harbouring the spliced leader sequence and the effect of trans-splicing knockdown in Schistosoma mansoni

Schistosomiasis is a major neglected tropical disease caused by trematodes from the genus Schistosoma. Because schistosomes exhibit a complex life cycle and numerous mechanisms for regulating gene expression, it is believed that spliced leader (SL) trans-splicing could play an important role in the biology of these parasites. The purpose of this study was to investigate the function of trans-splicing in Schistosoma mansoni through analysis of genes that may be regulated by this mechanism and via silencing SL-containing transcripts through RNA interference. Here, we report our analysis of SL transcript-enriched cDNA libraries from different S. mansoni life stages. Our results show that the trans-splicing mechanism is apparently not associated with specific genes, subcellular localisations or life stages. In cross-species comparisons, even though the sets of genes that are subject to SL trans-splicing regulation appear to differ between organisms, several commonly shared orthologues were observed. Knockdown of trans-spliced transcripts in sporocysts resulted in a systemic reduction of the expression levels of all tested trans-spliced transcripts; however, the only phenotypic effect observed was diminished larval size. Further studies involving the findings from this work will provide new insights into the role of trans-splicing in the biology of S. mansoni and other organisms. All Expressed Sequence Tags generated in this study were submitted to dbEST as five different libraries. The accessions for each library and for the individual sequences are as follows: (i) adult worms of mixed sexes (LIBEST_027999: JZ139310 - JZ139779), (ii) female adult worms (LIBEST_028000: JZ139780 - JZ140379), (iii) male adult worms (LIBEST_028001: JZ140380 - JZ141002), (iv) eggs (LIBEST_028002: JZ141003 - JZ141497) and (v) schistosomula (LIBEST_028003: JZ141498 - JZ141974).

Identification of SL addition trans-splicing acceptor sites in the internal transcribed spacer I region of pre-rRNA in Leishmania (Leishmania) amazonensis

Trypanosomatidae is a family of early branching eukaryotes harbouring a distinctive repertoire of gene expression strategies. Functional mature messenger RNA is generated via the trans-splicing and polyadenylation processing of constitutively transcribed polycistronic units. Recently, trans-splicing of pre-small subunit ribosomal RNA in the 5' external transcribed spacer region and of precursor tRNAsec have been described. Here, we used a previously validated semi-nested reverse transcription-polymerase chain reaction strategy to investigate internal transcribed spacer (ITS) I acceptor sites in total RNA from Leishmania (Leishmania) amazonensis. Two distinct spliced leader-containing RNAs were detected indicating that trans-splicing reactions occur at two AG acceptor sites mapped in this ITS region. These data provide further evidence of the wide spectrum of RNA molecules that act as trans-splicing acceptors in trypanosomatids.

Footprints of a trypanosomatid RNA world: pre-small subunit rRNA processing by spliced leader addition trans-splicing

The addition of a capped mini-exon [spliced leader (SL)] through trans-splicing is essential for the maturation of RNA polymerase (pol) II-transcribed polycistronic pre-mRNAs in all members of the Trypanosomatidae family. This process is an inter-molecular splicing reaction that follows the same basic rules of cis-splicing reactions. In this study, we demonstrated that mini-exons were added to precursor ribosomal RNA (pre-rRNA) are transcribed by RNA pol I, including the 5' external transcribed spacer (ETS) region. Additionally, we detected the SL-5'ETS molecule using three distinct methods and located the acceptor site between two known 5'ETS rRNA processing sites (A' and A1) in four different trypanosomatids. Moreover, we detected a polyadenylated 5'ETS upstream of the trans-splicing acceptor site, which also occurs in pre-mRNA trans-splicing. After treatment with an indirect trans-splicing inhibitor (sinefungin), we observed SL-5'ETS decay. However, treatment with 5-fluorouracil (a precursor of RNA synthesis that inhibits the degradation of pre-rRNA) led to the accumulation of SL-5'ETS, suggesting that the molecule may play a role in rRNA degradation. The detection of trans-splicing in these molecules may indicate broad RNA-joining properties, regardless of the polymerase used for transcription.

Clonación de genes por spliced leader a partir de genotecas de expresión de cisticercos de Taenia solium / Spliced leader gene cloning from expression library of Taenia solium cysticerci

La cisticercosis es una enfermedad causada por el estadio larvario (cisticerco) de Taenia solium. El diagnóstico de la enfermedad se ve limitado por la disponibilidad de antígenos del parásito, donde una alternativa sería la clonación de genes codificantes de antígenos. En T. solium, al igual que en otros parásitos, ocurre un mecanismo alternativo en el procesamiento de algunos ARNm, denominado trans-splicing, en el cual una pequeña molécula de ARN conocida como Spliced Leader (SL) es añadida al extremo 5´ de una molécula de pre-ARNm, formando diferentes ARNm maduros que contienen un extremo 5´ común. Debido a las limitaciones que presenta el diagnóstico, además del interés en el estudio de este mecanismo, el objetivo de este trabajo fue clonar moléculas que utilizan este procesamiento posttranscripcional. Para ello, se realizó un cribado mediante PCR a partir de genotecas de expresión de cisticerco de T. solium utilizando como cebador directo TSSL-DW2 y como reverso ZAP-3´UP que hibridan con la secuencia SL y con la del vector, respectivamente. Se obtuvieron productos de ADNc de diferentes tamaños, que fueron clonados en un plásmido de mantenimiento (pGEM-Teasy). Posteriormente, mediante PCR de colonias se verificó la presencia de los insertos y se estimó su tamaño, obteniendo un total de 56 clones de tamaño variable (150-1200 pb). Este diseño permitió la identificación de genes de T. solium que utilizan el mecanismo de trans-splicing; y además de ser una estrategia fácil para clonar moléculas completas, abre camino para futuras investigaciones enfocadas en el diagnóstico de cisticercosis.

Cysticercosis is caused by the larval stage of Taenia solium (cysticercus). The diagnosis of the disease is limited by the availability of parasite antigens; an alternative would be the cloning of gene encoding antigens. In T. solium, as in other parasites, an alternative mechanism in the processing of some mRNAs called trans-splicing occurs, in which a small RNA known as Spliced Leader (SL) is added to the 5´ end of pre-mRNA molecules, forming a common 5´-terminal exon of the mature mRNAs. Due to limitations for diagnosing the disease, in addition to the interest in the study of this mechanism, the aim of this work was to clone molecules that use this posttranscriptional processing. In this study we did a screening by PCR from cDNA library of T. solium cysticerci using the forward primer TSSL-DW2 and the reverse primer ZAP-3´UP that hybridize with SL and vector sequence, respectively. cDNAs of different sizes were obtained that were cloned in maintenance plasmids (pGEM-T-easy). The presence of inserts and their sizes were estimated by colony PCR, obtaining a total of 56 clones of different sizes (500-1200 bp). This design allows the identification of of T. solium genes using the trans-splicing mechanism; and besides being an easy strategy to clone complete molecules, it opens the way for future investigations on the diagnosis of cysticercosis.

Screening of cDNA Clone for Putative RNA Polymerase Subunit of Cysticercus cellulosae / 中国寄生虫学与寄生虫病杂志

Objective To obtain related genes of Cysticercus cellulosae from spliced leader (SL) cDNA library. Methods Spliced leader library of Cysticercus cellulosae was constructed using SL specific primer and oligo (dT)15 with M13M4 primer, and positive clones were then screened randomly, identified with enzyme restriction, followed by sequencing and homologous analysis. Results The amino acid sequence, encoded by the positive clone with a poly (A) 22 tail and a complete open reading frame (ORF), was with homology of RNA polymerase subunit genes of human, B. napus, fission yeast, A. thaliana, C. elegans and fruit fly up to 71.6%. Conclusion The protein, RNA polymerase subunit encoded putatively by the clone, is high conservative in different species.