Frecuencia de Chlamydia trachomatis en mujeres de edad fértil al usar PCR en tiempo real en el Servicio de Laboratorio del Hospital Carlos Andrade Marín / Recurrence of Chlamydia Trachomatis in women of childbearing age when using CRP in real time in the Laboratory Department of Carlos Andrade Marin Hospital

Introducción: Chlamydia trachomatis es una bacteria patógena comúnmente reportada como causante de infecciones del tracto urogenital. Materiales y métodos: Mediante este estudio se determinó la frecuencia de infección por C. trachomatis utilizando PCR en tiempo real en mujeres de edad fértil (18 ­ 45) que acudieron al laboratorio del Hospital Carlos Andrade Marín. Para el estudio se colectaron 200 muestras de orina y se identificó el patógeno utilizando un kit comercial que identificó el plásmido críptico y al gen ompA presentes en la bacteria. Resultados: Se detectaron 3 muestras positivas que correspondieron al 1.5% de frecuencia. Los casos positivos se encontraron dentro de grupo de edad de 25 a 26 años. Discusión: Los resultados obtenidos en la presente investigación son comparables con estudios similares realizados en Latinoamérica con grupos de bajo riesgo.

Introduction: Chlamydia trachomatis is a pathogenic bacterium commonly reported as cause of infections of the urogenital tract. Methods: This study determined the frequency of C. trachomatis infection using real-time PCR. Two hundred urine samples from women in reproductive age were analyzed (range: 18 ­ 45 years old), which have attended at Carlos Andrade Marín Hospital. In order to test the samples, a commercial kit that identifies the criptic plasmid and the ompA gene from C. trachomatis was used. Results: From the 200 samples, three were positive that corresponed to a frequency of 1.5%. All positive cases were found within the group of 25 and 26 years old. Discussion: The results obtained in this research are comparable with similar studies obtained in several Latin American countries in low risk population

Detección de Chlamydia trachomatis en muestras de exudado endocervical mediante una prueba de diagnóstico rápido y dos técnicas de reacción en cadena de la polimerasa / Detection of Chlamydia trachomatis in endocervical swab using rapid test and two reaction techniques polymerase chain

Introducción: Chlamydia trachomatis es el principal agente bacteriano que produce infecciones de transmisión sexual.Objetivo: detectar la presencia de C. trachomatis utilizando una prueba de diagnóstico rápido y compararla con la reacción en cadena de la polimerasa (RCP).Métodos: se procesaron 50 muestras de exudado endocervical, de mujeres sintomáticas del municipio 10 de Octubre. A las muestras se les aplicó la prueba Chlamy-check-1, un ensayo de RCP del gen del plásmido críptico y una RCP en tiempo real (RCP-TR) de la proteína mayor de la membrana externa (MOMP) de C. trachomatis, que fue utilizada como referencia. Se calculó, sensibilidad, especificidad, valor predictivo positivo (VPP) y negativo (VPN).Resultados: de las muestras estudiadas, 44 resultaron positivas por la prueba rápida, mientras que por la RCP del plásmido críptico solo 3 muestras (6 porciento) amplificaron. Al aplicar la RCP-TR, 4 muestras (8 porciento) se confirmaron como positivas, coincidiendo 3 por los tres métodos de diagnóstico. Al evaluar la prueba Chlamy-check-1 frente a la prueba de referencia se observó una sensibilidad de 100 porciento, mientras que la especificidad fue de 13 porciento, así como un VPP de 9,1 porciento y VPN de 100 porciento. Por el contrario, la RCP del plásmido críptico mostró una sensibilidad y especificidad de 75 y 100 porciento, respectivamente; un VPP de 100 porciento y VPN de 97,9 porciento.Conclusiones: se obtuvo diferencia entre los porcentajes de positividad detectados con la prueba rápida, y las técnicas de RCP. La baja especificidad de la prueba rápida indica la necesidad de realizar estudios de evaluación de este estuche diagnóstico.

Introduction: Chlamydia trachomatis is the leading bacterial agent that causes sexually transmitted infections.Objective: to detect the presence of C. trachomatis using a rapid test and compare it with the chain reaction (PCR).Methods: 50 endocervical exudates taken from symptomatic women were processed in Diez de October municipality. The samples were applied the Chlamy-check-1 test, a PCR assay of the cryptic plasmid gene and a real-time PCR (RT-PCR) of major outer membrane protein (MOMP) of C. trachomatis which was used as reference. Sensitivity, specificity, positive (PPV) and negative (NPV) predictive value were calculated.Results: 44 samples were positive by the rapid test, whereas only three samples (6 percent) amplified by cryptic plasmid PCR. Applying RT-PCR, 4 samples (8 percent) were confirmed as positive, 3 samples matched with three diagnostic methods. In assessing the Chlamy-check-1 versus the reference test, 100 percent of sensitivity was observed, while the specificity was 13 percent> Also PPV was 9.1percent and NPV was 100 percent. On the contrary, the cryptic plasmid PCR had 75 and 100 percent of sensitivity and specificity respectively, 100 percent PPV and 97.9 percent NPV.Conclusions: the difference was obtained between the percentages of positivity detected with both the rapid test, and CPR techniques. The low specificity of the rapid test indicates the need for further studies to evaluate this diagnostic kit.

A Small Cryptic Plasmid pZMO1 of Zymomonas mobilis ATCC10988

The nucleotide sequence of pZMO1, a small cryptic plasmid of Zymomonas mobilis ATCC10988 was determined. Analysis of 1,680 bp of sequence revealed 69% identity with Shigella sonnei plasmid, pKYM and 61% identity with Nostoc sp. ss DNA replicating plasmid. Analysis of a deduced amino acid sequence of an orf of pZMO1 revealed 75% identity and 90% similarity with the repA gene of Synechocystis sp. plasmid pCA2.4. The upstream region of the repA gene of pZMO1 possesses six directed repeat sequences and two inverted repeat sequences at downstream of the IR consensus sequence of nick region of rolling circle replication (RCR) plasmid. A typical terminator hairpin structure was found at the downstream region of repA gene. Degradation of single-stranded plasmid DNA by S1 nuclease was detected by Southern hybridization. It suggests that pZMO1 replicates by a rolling circle mechanism in Z. mobilis ATCC10988 cells.

Characterization and Sequence Analysis of Helicobacter pylori Cryptic Plasmid (pHP489)

The DNA sequence of a plasmid named pHP489 of Helicobacter pylori strain 489 was determined and analyzed to characterize its replication apparatus. The pHP489 plasmid consisted of 1,222 bp and had an overall G+C content of 33.1%. An ORF was predicted to encode the putative protein of 239 amino acid residues (28 kDa). A putative ribosomal binding site and a potential terminator sequence are located upstream and downstream of the ORF, respectively. However, the consensus sequence for a promoter in upstream of ORF was not found. A potential dna A box was found at 317 nt upstream of a start codon and followed by two-57 bp directed repeats and an inverted repeat. The DNA homology was found in the regions of less than 90 bp among pHPK255, pHPM180, and pHel1 of other H. pylori plasmids and Mycoplasma mycoides plasmids. pHP489K that was produced by pHP489 sequence and C. jejuni derived aph(3')-III, was transformed to various H. pylori isolates and were stably maintained in the H. pylori host without the addition of selective antibiotics for the 30-times subcultues. The plasmic vector, in which the ORF region of pHP489 DNA was deleted, could be transformed into H. pylori. However, the plasmid vector, whose the direct repeats region of pHP489 DNA was deleted, failed to be transformed. The direct repeats region of pHP489 DNA was confirmed to be bound with cytosolic factors of H. pylori. These results showed that the direct repeats region of pHP489 DNA is an essential apparatus by which the plasmid could be replicacted in H. pylori. And pHP489 plasmid was supposed to be replicated by host factors rather than plasmic-encoded factors.

Construction of shuttle vectors for cloning in Vibrio cholerae and Escherichia coli.

Starting from a naturally occurring cryptic plasmid pVC540 of Vibrio cholerae non-OI. strain 1095, a number of plasmid vectors have been constructed for cloning genes in Vibrio cholerae by introducing antibiotic resistance markers containing a set of unique cloning sites. The constructs pVC810 and pVE920 have the origins of both Vibrio cholerae and Escherichia coli replicons and are stable in both organisms in the absence of selective pressure. These plasmids can serve as shuttle vectors between Escherichia coli and Vibrio cholerae. The plasmid vectors reported here along with the demonstration of transformation in Vibrio cholerae by plasmid DNA will facilitate genetic analysis of this important human pathogen.