Weight-length relationships of six shrimp species caught off the Madeira Archipelago, Northeastern Atlantic / Relações peso-comprimento de seis espécies de camarão capturados ao largo do arquipélago da Madeira, Atlântico Nordeste

Abstract Length and weight relationships and descriptive statistics are reported for six shrimp species caught off the Madeira archipelago between 1983 and 2014 using bottom and floating traps from depths ranging from 50 to 1,300 m. The parameter b ranged between 2.36 for Plesionika ensis and 2.97 for Plesionika williamsi. All species showed a pattern of negative allometric growth. To the authors' knowledge all weight-length relationships presented herein are recorded for the first time from the Madeira area, and in the cases of Ligur ensiferus and Plesionika ensis are the first references worldwide.

Resumo As relações peso-comprimento e a estatística descritiva foram estimadas para seis espécies de camarões, capturados ao largo do arquipélago da Madeira, entre 1983 e 2014, usando armadilhas de fundo e alvoradas entre os 50 e 1.300 metros de profundidade. O parâmetro b variou entre 2,36 para Plesionika ensis e 2,97 para Plesionika williamsi. Todas as espécies evidenciaram um padrão de crescimento alométrico negativo. De acordo com o conhecimento dos autores, todas as relações peso-comprimento são aqui apresentadas pela primeira vez para a área da Madeira e no caso de Ligur ensiferus e Plesionika ensis são a primeira referência mundial.

Abundance and population structure of Plesionika narval (Fabricius, 1787) in the Northeastern Atlantic / Abundância e estrutura populacional de Plesionika narval (Fabricius, 1787) no Atlântico Nordeste

Abstract Analysis of abundance and population structure of Plesionika narval was performed on data concerning 5,255 specimens obtained from 62 fishing sets carried out off the Madeira archipelago (Northeastern Atlantic) between 2004 and 2008 in a depth range from 101 to 350 m. Abundance ranged from 0.01 to 19.74 specimens-per-trap and significant differences were found between seasons, probably as a result of an increment of population in the spring during the recruitment season. The analysis of size distribution revealed that the carapace length (CL) ranged from 2.45 to 28.61 mm and that mean female size consistently exceeded that of males. Differences in mean CL were statistically significant between depth strata and seasons. Of the specimens sampled, 57.00% were males, 41.88% females and 1.42% undetermined. Sex ratio also differed significantly between seasons according to depth strata, consolidating the hypothesis of the existence of seasonal migrations related with the reproductive cycle of this species. Ovigerous females showed larger sizes and occurred all year around and remain in shallow waters in winter, summer and autumn and move to deeper waters in spring. The highest frequency of ovigerous females was recorded in summer, between 151 and 200 m deep supporting the hypothesis that spawning of this species occurs in shallow waters, especially in late summer.

Resumo O estudo de abundância e dinâmica populacional de Plesionika narval foi efetuado com 5.255 espécimes provenientes de 62 lances de pesca realizados ao largo do arquipélago da Madeira (Atlântico Nordeste) de 2004 a 2008 entre 101 e 350 m de profundidade. A abundância oscilou entre 0,01 e 19,74 espécimes-por-armadilha com diferenças significativas entre estações provavelmente devido ao aumento da população na primavera durante o período de recrutamento. A análise da distribuição de tamanhos revelou que o comprimento da carapaça (CL) variou entre 2,45 e 28,61 mm e que o tamanho médio das fêmeas excedeu o dos machos. Verificaram-se diferenças significativas no CL médio entre estrato de profundidade e estação. Do total amostrado, 57,00% foram machos, 41,88% fêmeas e 1,42% indeterminados. A razão de sexos também diferiu significativamente entre estações de acordo com a profundidade, consolidando a hipótese da existência de migrações sazonais relacionadas com o ciclo reprodutivo desta espécie. As fêmeas ovadas apresentaram maiores tamanhos e ocorreram durante todo o ano permanecendo em águas pouco profundas no inverno, verão e outono e migrando para águas profundas na primavera. A maior frequência de fêmeas ovadas foi registada no verão, entre 151 e 200 m de profundidade reforçando a hipótese de que a desova desta espécie ocorre em águas menos profundas, especialmente no final do verão.

Prospective study of the fishery of the shrimp Plesionika narval (Fabricius, 1787) in the Northeastern Atlantic / Estudo prospectivo da pesca do camarão Plesionika narval (Fabricius, 1787) no Atlântico Nordeste

Abstract Several experimental surveys were carried out in the Northeastern Atlantic, Madeira archipelago from 1991 to 2008 to explore new fisheries resources. This study examined the selectivity of bottom and floating traps and the analysis of yield-per-recruit (YPR) and biomass-per-recruit (BPR) providing helpful insight to the management of the shrimp Plesionika narval. A total of 28,262 specimens were sampled and the analysis of length at first capture returned higher values when using floating traps indicating that these traps are more selective, exerting less pressure on the resource. The YPR and BPR analysis showed that the stock is under exploited for the studied area and suggests that the use of floating traps in the commercial fisheries of P. narval is recommended, which will allow a higher maximum allowable limit of exploitation and greater yield. The results suggest that P. narval has the potential to support a viable and sustainable fishery using floating traps.

Resumo Vários cruzeiros de investigação foram realizados no Atlântico Nordeste, arquipélago da Madeira entre 1991 e 2008 visando a exploração de novos recursos pesqueiros. O presente estudo contemplou a comparação da seletividade de pesca entre armadilhas de fundo e flutuantes e a análise de rendimento por recruta (YPR) e biomassa por recruta (BPR) facultando informação essencial para a gestão do camarão Plesionika narval. Um total de 28,262 especimens foram amostrados e a análise de comprimento de primeira captura retornou valores mais elevados aquando da utilização de armadilhas flutuantes, indicando que essas armadilhas são mais seletivas e exercem menos pressão sobre o recurso. A análise YPR e BPR mostrou que o estoque se encontra sob explorado para a área de estudo e recomenda a utilização de armadilhas flutuantes na pesca comercial de P. narval, que permitirão um limite máximo de exploração com rendimento superior. Os resultados sugerem que P. narval tem o potencial para suportar uma pescaria viável e sustentável mediante a utilização de armadilhas flutuantes.

Detección de protozoos parásitos entéricos, bacteriófagos de E. coli y organismos indicadores de contaminación en camarones comercializados en el estado Zulia / Detection of enteric protozoa parasites, E. coli bacteriophages and fecal pollution Indicator organisms in shrimp sold in the state of Zulia

Se determinó la presencia de Giardia intestinalis y Cryptospodidium parvum, bacteriófagos de Escherichia coli y organismos indicadores de contaminación (OIC), en muestras de camarones para el consumo humano comercializados en el estado Zulia. Los parásitos se concentraron a partir de sistemas digestivos de pools de camarones por la técnica de formol-éter y se cuantificaron por inmunofluorescencia directa. La concentración de los bacteriófagos de E. coli F+ y los OIC se evaluó por técnicas estándar. En este trabajo se detectó la presencia de G. intestinalis, C. parvum, bacteriófagos y E. coli en camarones comercializados en el estado Zulia que cumplían los criterios de la normativa venezolana de calidad sanitaria e inocuidad. Del total de muestras analizadas el 91,5% fueron positivas para G. intestinalis (promedio: 36,6 quistes/100g), 95,3% para C. parvum (promedio: 32,8 ooquistes/100g), 100% para los bacteriófagos de E coli F+ (promedio de 2,8 x 103 UFP/100 g) y 71,5% para E. coli (promedio de 4,3 x 104 NMP/g). Los resultados obtenidos indican que los camarones pueden convertirse en un vehículo para la transmisión de patógenos al hombre y dejan en evidencia la necesidad de la inclusión de un parámetro parasitológico y viral en el control de la calidad microbiológica de estos productos alimenticios.

The presence of G. intestinalis and C. parvum, E. coli F+ bacteriophages and fecal pollution indicator organisms was determined in shrimp for human consumption marketed in the State of Zulia. Parasites were concentrated from the digestive systems of shrimp pools, detected by formalin-ether and quantified by direct immunofluorescence. E. coli F + bacteriophage and pollution indicator organism concentrations were determined by standard techniques. In this work, G. intestinalis, C. parvum, E. coli F + bacteriophages and E. coli were detected in shrimp for human consumption marketed in the State of Zulia that met the quality criteria of Venezuelan health and safety regulations. 91.5% of the samples analyzed were positive for G. intestinalis (average: 36.6 cyst/100g), 95.3% for C parvum (average: 32.8 oocyst/100g), 100% for E coli F + bacteriophages (average: 2.8 x 103 FPFU/100g) and 71.5% for E. coli (average: 4.3 x 104 MPN/g). Results of this research indicate that shrimp can become a vehicle for transmitting pathogens to humans and demonstrate the need for including a parasitic and viral parameter in microbiological quality control for seafood.

Analysis of microbial diversity of nitrifying bacteria by terminal restriction fragment length polymorphism / 生物工程学报

We analyzed the microbial diversity and quantity of nitrifying bacteria in the enrichment reactor by Terminal Restriction Fragment Length Polymorphism (T_RFLP), a cultured-independent molecular technique. The result indicated that nitrobacteria enriched the best, and the diversity index decreased 62.80% compared with the initial data. Nitrobacteria were predominant in the reactor. Meanwhile, we studied the microbial diversity before and after adding Nitrobacteria into shrimp ponds, and analyzed several major bacterial species that existed stably in the pond. According to the analysis by T_RFLP program, species including Brevibacillus brevis, Microbacterium lactium, Azoarcus indigens and Bordetella holmesii were the dominant bacteria in the ponds.

Expression of a shrimp Kunitz-type protease inhibitor in Pichia pastoris and activity analysis / 生物工程学报

SKPI (shrimp Kunitz-type protease inhibitor) from Marsupenaeus japonicus is a member of serine protease inhibitors which play an important role in the arthropod immunity. To fully understand its function in the innate immunity of shrimp, the skpi gene was cloned into a modified pPIC9K vector with a 6-His tag and expressed by Pichia pastoris GS115. The secretory SKPI was purified from the medium with high purity by using Ni Sepharose High Performance. This results also indicated that the purified SKPI could inhibit the activity of trypsin specifically.

Crustacean fauna (Stomatopoda: Decapoda) associated with the deepwater fishery of Heterocarpus vicarius (Decapoda: Pandalidae) along the Pacific coast of Costa Rica

Commercial bottom trawlng is a successful and commonly used method to catch marine shrimps. However, the shrimp fishing gears are poorly selective, and in addition to the target species they catch and retain large quantities of non-target species (bycatch). This study presents data concerning species composition and depth distribution of the crustacean fauna (stomatopods and decapods) associated with Heterocarpus vicarius catches from Pacific Costa Rica. A total of 74 samples (three to five 20 min-tows each month) were taken between January 2004 and December 2005 with commercial shrimp trawlers at depths varying between 192 and 350 m. In all depth ranges analyzed, total catch of crustaceans was significantly higher than that of fishes. A total of 28 decapods and two stomatopod species were identified. In comparison to other bycatch composition of comparable fisheries in Latin America, the crustacean fauna of the H. vicarius fishery in Costa Rica is highly diverse. Most common species were Solenocera agassizii (Solenoceridae), Squilla biformis (Squillidae), Plesionika trispinus (Pandalidae), and Pleuroncodes sp. (Galatheidae), reaching total catch percentages of 57.2 %, 81.5 %, 91.8 %, and 99.6 % of individual catches, respectively. The results presented herein may contribute to the development of responsible management strategies for the deepwater fisheries in Costa Rica and Central America.

Las redes de arrastre son un método exitoso y comúnmente utilizado para la pesca de camarones marinos. Sin embargo, son poco selectivas y, junto con las especies comerciales, se pesca también grandes cantidades de otras especies (fauna acompañante). Este estudio presenta información acerca de la composición y distribución batimétrica de los crustáceos (estomatópodos y decápodos) asociados con las capturas de Heterocarpus vicarius en el Pacífico de Costa Rica. Entre enero del 2004 y diciembre de 2005, se tomaron 74 muestras en profundidades de 192-350 m (tres a cinco arrastres de 20 min cada mes), utilizando redes de arrastre comercial dirigidas a la pesca de camarones. En todos los intervalos de profundidad analizados, las capturas (kg) de crustáceos fueron significativamente mayores que las de los peces. Se identificaron 28 especies de decápodos y dos de estomatópodos. Al comparar la composición de especies de fauna acompañante de H. vicarius en Costa Rica con otras pesquerías de camarones en América Latina, se encuentra que la fauna de crustáceos es muy diversa. Las especies más comunes fueron Solenocera agassizii (Solenoceridae), Squilla biformis (Squillidae), Plesionika trispinus (Pandalidae) y Pleuroncodes sp. (Galatheidae),alcanzando porcentajes máximos de concentración - en un sólo arrastre - de hasta 57.2 %, 81.5 %, 91.8 % y 99.6 % de la captura, respectivamente. Los resultados presentados aquí pueden contribuir al desarrollo de estrategias de manejo responsable para las pesquerías de aguas profundas en Costa Rica y en Centroamérica.