An investigation on the infection status and genotype of Hantavirus carried by rodents in Yuyao City of Zhejiang Province / 预防医学

Objective To learn the infection status and genotype of Hantavirus carried by rodents in Yuyao City.Methods From May,2014 to May,2015,a total of 248 rodents were captured from four kinds of characteristic topographies (plains, mountains,coastal and urban areas)with clip night method in Yuyao.The real time fluorescence quantitative PCR method was used to detect the Hantavirus from lung specimens of rodents.The RT-PCR method was used to sequence and analyze the M fragment gene.Results Hantavirus nucleic acid was detected positive in 12 samples from a total of 248 specimens, and the positive rate was 4.84%,and they were all detected in Rattus norvegicus and were all Seoul virus (SEOV).Eight samples were sequenced and analyzed,and phylogenetic tree was constructed.The result showed SEOV S3 subtype with high homology.Conclusion Hantavirus carried by rodents in Yuyao City is mainly SEOV S3 subtype,and the distribution of gene subtype is single.Rattus norvegicus is the main host of this virus.

Complete sequence of the M segment of Amur virus in rodent from China / 中华流行病学杂志

Objective To study the complete sequence of M segment of Amur virus in rodents and to explore their molecular characteristics. Methods Complete M segment of Amur virus in rodent from China was amplified by RT-PCR. The purified PCR product was cloned into pGEM-T Easy vector and then sequenced. Phylogenetic analysis on multiple nucleotide sequences was performed with the Tree PUZZLE and DNAStar software. Results The full-length of its M gene comprised of 3615 nucleotides with one open reading frame (ORF) including 3408 nucleotides and encoding a protein which comprised 1135 amino acids. The ORF was located at bases 41 to 3448. The phylogenetic analysis of JilinAP06 with other hantaviruses revealed that the complete sequence of M segment of JilinAP06 strain was closely related to those Amur viruses such as B78 strain, Liu strain and H5 strain were all from the patients. The complete sequence of M segment of JilinAP06 had only 79.5% identities with the nucleotide sequence of HTNV strain 76-118. Conclusion The complete sequence on M segment of Amur virus in rodent was first time identified in this country.

Correlation of Virologic Property and Phylogenetic Analysis of Hantaan Viruses Isolated from Patients and Reservoirs in Korea

Twenty isolates of Hantavirus were isolated from patients and reserovirs from 1988 to 1994 in Korea. Isolation rate was 1.9% (10/538) in patients, 6.2% (5/81) in Apodemus sp., 2.6% (1/38) in Rattus sp. and 0.6% (4/677) in bats. Reciprocal mean IFA titers ranged from 27.5 to 1,024 at the specimen collection. According to the growth rate and reaching peak titer of infectivity, the isolates were grouped as rapid, intermediate, and slow growing groups. All isolates were confirmed as Hantaan type by the nested RT-PCR on the Gl region of the M segment. Comparison of nucleotide sequence (Nt: 2101 - Nt: 2280) of the G2 region revealed that the sequence homology between Hantaan 76/118 virus and the isolates was more than 90%. Several nucleotide positions of the isolates showed high variation. The variation rate of patientisolates was about one-half when compared with that of rodentisolates. On the basis of phylogenetic analysis Hantaan viruses isolated were divided into two genogroups. These results indicate that Hantaan virus is highly dominant serotype in Korea and the virologic property and genogroup are not correlated.