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1.
J Anim Ecol ; 93(10): 1582-1592, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39252414

ABSTRACT

Understanding spatial variation in species distribution and community structure is at the core of community ecology. Nevertheless, the effect of distance on metacommunity structure remains little studied. We examine how plant-pollinator community structure changes across geographical distances at a regional scale and disentangle its underlying local and regional processes. We use a multilayer network to represent linked plant-pollinator communities as a metacommunity in the Canary Islands. We used modularity (i.e. the extent to which the community is partitioned into groups of densely interacting species) to quantify distance decay in structure across space. In multilayer modularity, the same species can belong to different modules in different communities, and modules can span communities. This enabled quantifying how similarity in module composition varied with distance between islands. We developed three null models, each controlling for a separate component of the multilayer network, to disentangle the role of species turnover, interaction rewiring and local factors in driving distance decay in structure. We found a pattern of distance decay in structure, indicating that islands tended to share fewer modules with increasing distance. Species turnover (but not interaction rewiring) was the primary regional process triggering distance decay in structure. Local interaction structure also played an essential role in determining the structure similarity of communities at a regional scale. Therefore, local factors that determine species interactions occurring at a local scale drive distance decay in structure at a regional scale. Our work highlights the interplay between local and regional processes underlying community structure. The methodology, and specifically the null models, we developed provides a general framework for linking communities in space and testing different hypotheses regarding the factors generating spatial structure.


Subject(s)
Pollination , Animals , Spain , Models, Biological , Insecta/physiology , Ecosystem
2.
FEMS Microbiol Ecol ; 100(10)2024 Sep 14.
Article in English | MEDLINE | ID: mdl-39277783

ABSTRACT

Bacterial communities in river sediments are shaped by a trade-off between dispersal from upstream or nearby land and selection by the local environmental conditions. In temporary rivers (i.e. those characterized by long drying periods and subsequent rewetting) seasonal hydrological dynamics shape bacterial communities by connecting or disconnecting different river habitats. In this study, we tracked and compared the temporal and spatial changes in the composition of bacterial communities in streambed sediments and floodplain habitats across both permanent and intermittent river segments. Our findings revealed that environmental selection played a key role in assembling bacterial communities in both segments. We argue that distinct environmental features act as filters at the local scale, favoring specific bacterial taxa in isolated pools and promoting some typically terrestrial taxa in dry areas. Considering the prospective extension of drying intervals due to climate change, our results suggest an emerging trend wherein bacterial assemblages in temporary streams progressively incorporate microorganisms of terrestrial origin, well-adapted to tolerate desiccation phases. This phenomenon may constitute an integral facet of the broader adaptive dynamics of temporary river ecosystems in response to the impacts of climate change.


Subject(s)
Bacteria , Ecosystem , Geologic Sediments , Rivers , Rivers/microbiology , Geologic Sediments/microbiology , Bacteria/genetics , Bacteria/classification , Bacteria/isolation & purification , Bacteria/growth & development , Climate Change , Seasons , RNA, Ribosomal, 16S/genetics , Biodiversity
3.
Proc Biol Sci ; 291(2024): 20240567, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38864323

ABSTRACT

Understanding the drivers of community stability has been a central goal in ecology. Traditionally, emphasis has been placed on studying the effects of biotic interactions on community variability, and less is understood about how the spatial configuration of habitats promotes or hinders metacommunity stability. To test the effects of contrasting spatial configurations on metacommunity stability, I designed metacommunities with patches connected as random or scale-free networks. In these microcosms, two prey and one protist predator dispersed, and I evaluated community persistence, tracked biomass variations, and measured synchrony between local communities and the whole metacommunity. After 30 generations, scale-free metacommunities had lower global biomass variability and higher persistence, suggesting higher stability. Synchrony between patches was lower in scale-free metacommunities. Patches in scale-free metacommunities showed a positive relationship between variability and patch connectivity, indicating higher stability in isolated communities. No clear relationship between variability and patch connectivity was observed in random networks. These results suggest the increased heterogeneity in connectivity of scale-free networks favours the prevalence of isolated patches of the metacommunity, which likely act as refugia against competition-the dominant interaction in this system-resulting in higher global stability. These results highlight the importance of accounting for network topology in the study of spatial dynamics.


Subject(s)
Ecosystem , Population Dynamics , Animals , Biomass , Food Chain , Biota , Models, Biological
4.
Sci Total Environ ; 930: 172517, 2024 Jun 20.
Article in English | MEDLINE | ID: mdl-38641092

ABSTRACT

Pool refuges are critical for maintaining stream fish diversity in increasingly intermittent streams. Yet, the patterns and drivers of beta diversity of native and non-native fish in pool refuges remain poorly known. Focusing on Mediterranean streams, we decomposed beta diversity of native and non-native fish into richness difference (RichDiff) and species replacement (Repl), and local (LCBD, LCBDRichDiff and LCBDRepl) and species (SCBD) contributions. We assessed the influence of environmental and spatial factors associated with drought and damming fragmentations on beta diversity components and LCBDs, and of local species richness and occupancy on LCBDs and SCBD, respectively. Overall, non-native species showed a more limited occupancy of pool refuges than native fish. RichDiff dominated beta diversity, though it was influenced by drought and damming fragmentations for native fish and local environment for non-native fish. Repl for native fish was slightly influenced by local environment, but for non-native fish was largely driven by drought and damming, albeit with a contribution of local environment as well. LCBD and LCBDRichDiff increased in pools in low order streams for native fish and at low elevations for non-native fish, and with high or low species richness. SCBD was higher for native species with intermediated pool occupancy, but for non-native species with low occupancy. Our results suggest that stream fragmentation may drive native species loss and non-native species replacement in pool refuges, and that environmental filtering may shape non-native species loss. Pools in lower order streams harbouring unique species-rich or species-poor assemblages should be prioritize for conservation and restoration, respectively, and pools at low elevation with unique non-native assemblages should deserve control efforts. We encourage the partitioning of beta diversity and individual analysis of native and non-native fish in intermittent streams, which may be key in stressing the importance of pool refuges in safeguarding native fish diversity.


Subject(s)
Biodiversity , Droughts , Fishes , Rivers , Animals , Introduced Species , Ecosystem
5.
Proc Natl Acad Sci U S A ; 121(5): e2314215121, 2024 Jan 30.
Article in English | MEDLINE | ID: mdl-38261621

ABSTRACT

The competition-colonization (CC) trade-off is a well-studied coexistence mechanism for metacommunities. In this setting, it is believed that the coexistence of all species requires their traits to satisfy restrictive conditions limiting their similarity. To investigate whether diverse metacommunities can assemble in a CC trade-off model, we study their assembly from a probabilistic perspective. From a pool of species with parameters (corresponding to traits) sampled at random, we compute the probability that any number of species coexist and characterize the set of species that emerges through assembly. Remarkably, almost exactly half of the species in a large pool typically coexist, with no saturation as the size of the pool grows, and with little dependence on the underlying distribution of traits. Through a mix of analytical results and simulations, we show that this unlimited niche packing emerges as assembly actively moves communities toward overdispersed configurations in niche space. Our findings also apply to a realistic assembly scenario where species invade one at a time from a fixed regional pool. When diversity arises de novo in the metacommunity, richness still grows without bound, but more slowly. Together, our results suggest that the CC trade-off can support the robust emergence of diverse communities, even when coexistence of the full species pool is exceedingly unlikely.


Subject(s)
Bandages , Phenotype , Probability
6.
Ecology ; 105(2): e4219, 2024 Feb.
Article in English | MEDLINE | ID: mdl-38037301

ABSTRACT

A tenet of ecology is that temporal variability in ecological structure and processes tends to decrease with increasing spatial scales (from locales to regions) and levels of biological organization (from populations to communities). However, patterns in temporal variability across trophic levels and the mechanisms that produce them remain poorly understood. Here we analyzed the abundance time series of spatially structured communities (i.e., metacommunities) spanning basal resources to top predators from 355 freshwater sites across three continents. Specifically, we used a hierarchical partitioning method to disentangle the propagation of temporal variability in abundance across spatial scales and trophic levels. We then used structural equation modeling to determine if the strength and direction of relationships between temporal variability, synchrony, biodiversity, and environmental and spatial settings depended on trophic level and spatial scale. We found that temporal variability in abundance decreased from producers to tertiary consumers but did so mainly at the local scale. Species population synchrony within sites increased with trophic level, whereas synchrony among communities decreased. At the local scale, temporal variability in precipitation and species diversity were associated with population variability (linear partial coefficient, ß = 0.23) and population synchrony (ß = -0.39) similarly across trophic levels, respectively. At the regional scale, community synchrony was not related to climatic or spatial predictors, but the strength of relationships between metacommunity variability and community synchrony decreased systematically from top predators (ß = 0.73) to secondary consumers (ß = 0.54), to primary consumers (ß = 0.30) to producers (ß = 0). Our results suggest that mobile predators may often stabilize metacommunities by buffering variability that originates at the base of food webs. This finding illustrates that the trophic structure of metacommunities, which integrates variation in organismal body size and its correlates, should be considered when investigating ecological stability in natural systems. More broadly, our work advances the notion that temporal stability is an emergent property of ecosystems that may be threatened in complex ways by biodiversity loss and habitat fragmentation.


Subject(s)
Ecosystem , Food Chain , Biodiversity , Fresh Water , Time Factors
7.
J Anim Ecol ; 92(11): 2122-2125, 2023 11.
Article in English | MEDLINE | ID: mdl-37908114

ABSTRACT

The current biodiversity crisis requires efficient approaches to address the ongoing impoverishment of natural communities and the depletion of ecosystem services and functions. In this sense, identifying key species that promote the functioning of ecological processes can be strategic to guide actions aiming at the conservation and restoration of biodiversity. Node-level metrics in interaction networks can be helpful to identify those key species, as they measure the role each species plays in organizing the interactions. Moreover, ecological correlates of species structural roles may vary between local and global networks of interactions, reflecting distinct mechanisms acting at different spatial scales. By studying local seed dispersal networks and one global meta-network combining those local networks, Moulatlet et al. identified the most important traits explaining bird species centrality at varying spatial scales. They found that body mass was the main trait explaining centrality at the local scale, whereas range size was the main predictor of species centrality at the global scale. In this contribution, besides assessing local interaction networks, Moulatlet et al. adopt a biogeographical perspective to seed dispersal systems, extending our knowledge about the possible mechanisms that underlie the organization of interacting assemblages when changing the spatial scale of observation. Future efforts on this field could include an intermediate scale, comprising the level of metacommunities, shedding light on the interplay between local and spatial processes, both embedded in biogeographical realms, when determining the organization of interactions and the ecological correlates of species roles.


A atual crise da biodiversidade requer abordagens eficientes para lidar com o empobrecimento contínuo das comunidades naturais e com o esgotamento das funções e dos serviços ecossistêmicos. Neste sentido, identificar espécies-chave que promovam o funcionamento dos processos ecológicos pode ser estratégico para guiar ações que visam a conservação e a restauração da biodiversidade. Métricas em nível dos nós em redes de interação podem ser úteis para identificar tais espécies-chave, já que quantificam o papel que cada espécie desempenha em organizar as interações. Além disso, os correlatos ecológicos dos papéis estruturais das espécies podem variar entre redes de interações locais e globais, refletindo os distintos mecanismos que atuam em diferentes escalas espaciais. Ao estudar redes de dispersão de sementes locais e uma meta-rede global que combina essas redes locais, Moulatlet et al. identificaram as características mais importantes para explicar a centralidade das espécies de aves em diferentes escalas espaciais. Eles encontraram a massa corporal como principal característica que explicava a centralidade na escala local, enquanto o tamanho da distribuição foi o principal preditor da centralidade das espécies na escala global. Nesta contribuição, além de avaliar redes de interação locais, Moulatlet et al. adotaram uma perspectiva biogeográfica ao tratar os sistemas de dispersão de sementes, ampliando nosso conhecimento sobre os possíveis mecanismos subjacentes à organização das interações quando mudamos a escala espacial de observação. Esforços futuros neste campo poderiam incluir uma escala intermediária, compreendendo o nível de metacomunidades, buscando esclarecer as relações entre processos locais e processos espaciais, ambos inseridos em domínios biogeográficos, ao determinar a organização das interações e os correlatos ecológicos dos papéis estruturais das espécies.


Subject(s)
Ecosystem , Seed Dispersal , Animals , Seeds , Biodiversity , Birds
8.
Mol Ecol ; 32(16): 4467-4481, 2023 08.
Article in English | MEDLINE | ID: mdl-37296539

ABSTRACT

The intra- and interspecific facets of biodiversity have traditionally been analysed separately, limiting our understanding of how evolution has shaped biodiversity, how biodiversity (as a whole) alters ecological dynamics and hence eco-evolutionary feedbacks at the community scale. Here, we propose using candidate genes phylogenetically-conserved across species and sustaining functional traits as an inclusive biodiversity unit transcending the intra- and interspecific boundaries. This framework merges knowledge from functional genomics and functional ecology, and we first provide guidelines and a concrete example for identifying phylogenetically-conserved candidate genes (PCCGs) within communities and for measuring biodiversity from PCCGs. We then explain how biodiversity measured at PCCGs can be linked to ecosystem functions, which unifies recent observations that both intra- and interspecific biodiversity are important for ecosystem functions. We then highlight the eco-evolutionary processes shaping PCCG diversity patterns and argue that their respective role can be inferred from concepts derived from population genetics. Finally, we explain how PCCGs may shift the field of eco-evolutionary dynamics from a focal-species approach to a more realistic focal-community approach. This framework provides a novel perspective to investigate the global ecosystem consequences of diversity loss across biological scales, and how these ecological changes further alter biodiversity evolution.


Subject(s)
Biological Evolution , Ecosystem , Biodiversity , Genetics, Population , Genomics
9.
Microb Ecol ; 86(4): 2373-2385, 2023 Nov.
Article in English | MEDLINE | ID: mdl-37233803

ABSTRACT

Alien species can host diverse microbial communities. These associated microbiomes may be important in the invasion process and their analysis requires a holistic community-based approach. We analysed the skin and gut microbiome of Eleutherodactylus johnstonei from native range populations in St Lucia and exotic range populations in Guadeloupe, Colombia, and European greenhouses along with their respective environmental microbial reservoir through a 16S metabarcoding approach. We show that amphibian-associated and environmental microbial communities can be considered as meta-communities that interact in the assembly process. High proportions of bacteria can disperse between frogs and environment, while respective abundances are rather determined by niche effects driven by the microbial community source and spatial environmental properties. Environmental transmissions appeared to have higher relevance for skin than for gut microbiome composition and variation. We encourage further experimental studies to assess the implications of turnover in amphibian-associated microbial communities and potentially invasive microbiota in the context of invasion success and impacts. Within this novel framework of "nested invasions," (meta-)community ecology thinking can complement and widen the traditional perspective on biological invasions.


Subject(s)
Gastrointestinal Microbiome , Microbiota , Animals , Introduced Species , RNA, Ribosomal, 16S/genetics , Anura
10.
J Anim Ecol ; 92(7): 1416-1430, 2023 07.
Article in English | MEDLINE | ID: mdl-37194203

ABSTRACT

Spatial dynamics can promote persistence of strongly interacting predators and prey. Theory predicts that spatial predator-prey systems are prone to long transients, meaning that the dynamics leading to persistence or extinction manifest over hundreds of generations. Furthermore, the form and duration of transients may be altered by spatial network structure. Few empirical studies have examined the importance of transients in spatial food webs, especially in a network context, due to the difficulty in collecting the large scale and long-term data required. We examined predator-prey dynamics in protist microcosms using three experimental spatial structures: isolated, river-like dendritic networks and regular lattice networks. Densities and patterns of occupancy were followed for both predators and prey over a time scale that equates to >100 predator and >500 prey generations. We found that predators persisted in dendritic and lattice networks whereas they went extinct in the isolated treatment. The dynamics leading to predator persistence played out over long transients with three distinct phases. The transient phases showed differences between dendritic and lattice structures, as did underlying patterns of occupancy. Spatial dynamics differed among organisms in different trophic positions. Predators showed higher local persistence in more connected bottles while prey showed this in more spatially isolated ones. Predictions based on spatial patterns of connectivity derived from metapopulation theory explained predator occupancy, while prey occupancy was better explained by predator occupancy. Our results strongly support the hypothesized role of spatial dynamics in promoting persistence in food webs, but that the dynamics ultimately leading to persistence may occur with long transients which in turn may be influenced by spatial network structure and trophic interactions.


Subject(s)
Food Chain , Predatory Behavior , Animals , Population Dynamics , Nutritional Status
11.
Sci Prog ; 106(2): 368504231175324, 2023.
Article in English | MEDLINE | ID: mdl-37211750

ABSTRACT

The voter model is a paradigmatic model of competition between alternative states within groups. Its properties have been intensively studied in statistical physics. Due to its generality, the model lends itself to various applications in ecology and evolutionary biology. I briefly review these opportunities, but call attention to a frequently occurring misinterpretation: it is often assumed that the agents in the model represent individual organisms. I argue that this assumption only holds under very specific conditions, and thus the meaning of the agents is often 'lost in translation' between physics and biology. Instead of an individual-based view, I propose that an alternative, site-based approach is more plausible. I suggest that the biological applicability of the model could further be broadened by considering the transitional states of the agents (sites) explicitly and letting the network evolve according to the agents' states.


Subject(s)
Biological Evolution , Ecology
12.
Philos Trans R Soc Lond B Biol Sci ; 378(1878): 20220096, 2023 06 05.
Article in English | MEDLINE | ID: mdl-37066642

ABSTRACT

Island biogeography theory has proved a robust approach to predicting island biodiversity on the assumption of species equivalency. However, species differ in their grouping behaviour and are entangled by complex interactions in island communities, such as competition and mutualism. We here investigated whether intra- and/or interspecific sociality may influence biogeographic patterns, by affecting movement between islands or persistence on them. We classified bird species in a subtropical reservoir island system into subcommunities based on their propensity to join monospecific and mixed-species flocks. We found that subcommunities which had high propensity to flock interspecifically had higher colonization rates and lower extinction rates over a 10-year period. Intraspecific sociality increased colonization in the same analysis. A phylogenetically corrected analysis confirmed the importance of interspecific sociality, but not intraspecific sociality. Group-living could enable higher risk crossings, with greater vigilance also linked to higher foraging efficiency, enabling colonization or long-term persistence on islands. Further, if group members are other species, competition can be minimized. Future studies should investigate different kinds of island systems, considering positive species interactions driven by social behaviour as potential drivers of community assembly on islands. This article is part of the theme issue 'Mixed-species groups and aggregations: shaping ecological and behavioural patterns and processes'.


Subject(s)
Biodiversity , Social Behavior , Animals , Birds , Islands , Extinction, Biological
13.
J Theor Biol ; 566: 111479, 2023 06 07.
Article in English | MEDLINE | ID: mdl-37075827

ABSTRACT

A central question in ecology is understanding the influence of the spatial topology on the dynamics of a metacommunity. This is not an easy task, as most fragmented ecosystems have trophic interactions involving many species and patches. Recent attempts to solve this challenge have introduced certain simplifying assumptions or focused on a limited set of examples. These simplifications make the models mathematically tractable but keep away from real-world problems. In this paper, we provide a novel methodology to describe the influence of the spatial topology on the total population size of the species when the dispersal rates are small. The main conclusion is that the influence of the spatial topology is the result of the influence of each path in isolation. Here, a path refers to a pairwise connection between two patches. Our framework can be readily used with any metacommunity, and therefore represents a unification of biological insights. We also discuss several applications regarding the construction of ecological corridors.


Subject(s)
Ecosystem , Population Density , Population Dynamics
14.
J Anim Ecol ; 92(6): 1113-1123, 2023 06.
Article in English | MEDLINE | ID: mdl-37087688

ABSTRACT

Dispersal is a central life history trait that affects the ecological and evolutionary dynamics of populations and communities. The recent use of experimental evolution for the study of dispersal is a promising avenue for demonstrating valuable proofs of concept, bringing insight into alternative dispersal strategies and trade-offs, and testing the repeatability of evolutionary outcomes. Practical constraints restrict experimental evolution studies of dispersal to a set of typically small, short-lived organisms reared in artificial laboratory conditions. Here, we argue that despite these restrictions, inferences from these studies can reinforce links between theoretical predictions and empirical observations and advance our understanding of the eco-evolutionary consequences of dispersal. We illustrate how applying an integrative framework of theory, experimental evolution and natural systems can improve our understanding of dispersal evolution under more complex and realistic biological scenarios, such as the role of biotic interactions and complex dispersal syndromes.


Subject(s)
Biological Evolution , Life History Traits , Animals , Population Dynamics , Ecosystem
15.
Ecology ; 104(4): e3912, 2023 04.
Article in English | MEDLINE | ID: mdl-36335567

ABSTRACT

The spatial distribution of predators can affect both the distribution and diversity of their prey. Therefore, differences in predator dispersal ability that affect their spatial distribution, could also affect prey communities. Here, we use the microbial communities within pitcher plant leaves as a model system to test the relationship between predator (protozoa) dispersal ability and distribution, and its consequences for prey (bacteria) diversity and composition. We hypothesized that limited predator dispersal results in clustered distributions and heterogeneous patches for prey species, whereas wide predator dispersal and distribution could homogenize prey metacommunities. We analyzed the distribution of two prominent bacterivore protozoans from a 2-year survey of an intact field of Sarracenia purpurea pitcher plants, and found a clustered distribution of Tetrahymena and homogeneous distribution of Poterioochromonas. We manipulated the sources of protozoan colonists and recorded protozoan recruitment and bacterial diversity in target leaves in a field experiment. We found the large ciliate, Tetrahymena, was dispersal limited and occupied few leaves, whereas the small flagellate Poterioochromonas was widely dispersed. However, the bacterial communities these protozoans feed on was unaffected by clustering of Tetrahymena, but likely influenced by Poterioochromonas and other bacterivores dispersing in the field. We propose that bacterial communities in this system are structured by a combination of well dispersed bacterivores, bacterial dispersal, and bottom-up mechanisms. Clustered predators could become strong drivers of prey communities if they were specialists or keystone predators, or if they exerted a dominant influence on other predators in top-down controlled systems. Linking dispersal ability within trophic levels and its consequences for trophic dynamics can lead to a more robust perspective on trophic metacommunities.


Subject(s)
Ciliophora , Microbiota , Animals , Predatory Behavior , Bacteria , Models, Biological , Population Dynamics , Food Chain
16.
Freshw Biol ; 68(8): 1303-1318, 2023 Aug.
Article in English | MEDLINE | ID: mdl-38516301

ABSTRACT

River-floodplain ecosystems play a crucial role in connecting landscape patches through hydrological connectivity, but they are among the most threatened ecosystems. Floodplains provide important habitat for amphibians by connecting aquatic and terrestrial habitats. Modifications to floodplain hydrology can impact amphibian communities, yet few studies have examined amphibian metacommunities in floodplain wetlands.In this study, we assessed patterns in amphibian breeding abundance in one of the largest floodplains of the Danube River, Hungary, relative to hydrological connectivity and multi-scale variables at 30 waterbody sites. Our aim was to determine whether these patterns aligned with the pond-permanence gradient hypothesis, where breeding amphibian abundance is predicted to be highest in ephemeral ponds without large predatory fish. We used Bayesian hierarchical modelling to estimate multi-species abundance from repeated survey (count) data collected over one breeding season.We detected the eggs and larvae of four amphibian species. The best model of abundance included covariates describing two principal component axes associated with waterbody hydrology and landscape composition within a 500-m radius of a site. There was a positive relationship between mean community abundance at a site and hydrological disconnection from the main river channel; however, the common toad (Bufo bufo) was associated with hydrologically connected waterbodies. There was a positive relationship between mean community abundance and a high proportion of forest cover and low cover of agricultural land within a 500-m radius around a site, although this relationship was clear for only two species. There was no support for models containing the number of large predatory fish species detected at a site.Although our results showed that amphibian abundance declined with hydrological connectivity, based on model selection we could not ascribe this relationship to an increased number of large predatory fish species detected in waterbodies close to the main river channel. Differences in life history and habitat requirements are likely to have explained interspecific responses to hydrological connectivity. Our results underscore the importance of addressing amphibian abundance at multiple spatial scales in floodplain wetlands, as landscape composition partly explained patterns in abundance.Application of multi-species abundance modelling allowed us to investigate environmental relationships for common and infrequently detected species. Habitat restoration programmes in floodplains should provide waterbodies disconnected from main river channels as potential amphibian breeding sites and protect or restore forest as terrestrial habitat.

17.
BMC Biol ; 20(1): 262, 2022 11 30.
Article in English | MEDLINE | ID: mdl-36447225

ABSTRACT

BACKGROUND: During range expansion in spatially distributed habitats, organisms differ from one another in terms of their patterns of localization versus propagation. To exploit locations or explore the landscape? This is the competition-colonization trade-off, a dichotomy at the core of ecological succession. In bacterial communities, this trade-off is a fundamental mechanism towards understanding spatio-temporal fluxes in microbiome composition. RESULTS: Using microfluidics devices as structured bacterial habitats, we show that, in a synthetic two-species community of motile strains, Escherichia coli is a fugitive species, whereas Pseudomonas aeruginosa is a slower colonizer but superior competitor. We provide evidence highlighting the role of succession and the relevance of this trade-off in the community assembly of bacteria in spatially distributed patchy landscapes. Furthermore, aggregation-dependent priority effects enhance coexistence which is not possible in well-mixed environments. CONCLUSIONS: Our findings underscore the interplay between micron-scale landscape structure and dispersal in shaping biodiversity patterns in microbial ecosystems. Understanding this interplay is key to unleash the technological revolution of microbiome applications.


Subject(s)
Escherichia coli Infections , Microbiota , Humans , Biodiversity , Escherichia coli , Pseudomonas aeruginosa
18.
Front Microbiol ; 13: 877519, 2022.
Article in English | MEDLINE | ID: mdl-35935241

ABSTRACT

Microorganisms have the potential to affect plant seed germination and seedling fitness, ultimately impacting plant health and community dynamics. Because seed-associated microbiota are highly variable across individual plants, plant species, and environments, it is challenging to identify the dominant processes that underlie the assembly, composition, and influence of these communities. We propose here that metacommunity ecology provides a conceptually useful framework for studying the microbiota of developing seeds, by the application of metacommunity principles of filtering, species interactions, and dispersal at multiple scales. Many studies in seed microbial ecology already describe individual assembly processes in a pattern-based manner, such as correlating seed microbiome composition with genotype or tracking diversity metrics across treatments in dispersal limitation experiments. But we see a lot of opportunities to examine understudied aspects of seed microbiology, including trait-based research on mechanisms of filtering and dispersal at the micro-scale, the use of pollination exclusion experiments in macro-scale seed studies, and an in-depth evaluation of how these processes interact via priority effect experiments and joint species distribution modeling.

19.
Proc Natl Acad Sci U S A ; 119(26): e2200390119, 2022 06 28.
Article in English | MEDLINE | ID: mdl-35727977

ABSTRACT

Biodiversity is often attributed to a dynamic equilibrium between the immigration and extinction of species. This equilibrium forms a common basis for studying ecosystem assembly from a static reservoir of migrants-the mainland. Yet, natural ecosystems often consist of many coupled communities (i.e., metacommunities), and migration occurs between these communities. The pool of migrants then depends on what is sustained in the ecosystem, which, in turn, depends on the dynamic migrant pool. This chicken-and-egg problem of survival and dispersal is poorly understood in communities of many competing species, except for the neutral case-the "unified neutral theory of biodiversity." Employing spatiotemporal simulations and mean-field analyses, we show that self-consistent dispersal puts rather tight constraints on the dynamic migration-extinction equilibrium. When the number of species is large, species are pushed to the edge of their global extinction, even when competition is weak. As a consequence, the overall diversity is highly sensitive to perturbations in demographic parameters, including growth and dispersal rates. When dispersal is short range, the resulting spatiotemporal abundance patterns follow broad scale-free distributions that correspond to a directed percolation phase transition. The qualitative agreement of our results for short-range and long-range dispersal suggests that this self-organization process is a general property of species-rich metacommunities. Our study shows that self-sustaining metacommunities are highly sensitive to environmental change and provides insights into how biodiversity can be rescued and maintained.


Subject(s)
Biodiversity , Extinction, Biological , Models, Biological , Population Dynamics
20.
Ecology ; 103(8): e3716, 2022 08.
Article in English | MEDLINE | ID: mdl-35388458

ABSTRACT

Space and time promote variation in network structure by affecting the likelihood of potential interactions. However, little is known about the relative roles of ecological and biogeographical processes in determining how species interactions vary across space and time. Here we study the spatiotemporal variation in predator-prey interaction networks formed by anurans and arthropods and test for the effects of prey availability in determining interaction patterns, information that is often absent and limits the understanding of the determinants of network structure. We found that network dissimilarity between ecoregions and seasons was high and primarily driven by interaction rewiring.We also found that species turnover was positively related to geographical distance. Using a null model approach to disentangle the effect of prey availability on the spatial and temporal variation, we show that differences in prey availability were important in determining the variation in network structure between seasons and among areas. Our study reveals that fluctuations in prey abundance, alongside the limited dispersal abilities of anurans and their prey, may be responsible for the spatial patterns that emerged in our predator-prey metaweb. These findings contribute to our understanding of the assembly rules that maintain biotic processes in metacommunities and highlight the importance of prey availability to the structure of these systems.


Subject(s)
Food Chain , Predatory Behavior , Animals , Seasons
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