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1.
J Chem Phys ; 138(22): 225103, 2013 Jun 14.
Artigo em Inglês | MEDLINE | ID: mdl-23781824

RESUMO

The topographical and physico-chemical complexity of protein-water interfaces scales down to the sub-nanoscale range. At this level of confinement, we demonstrate that the dielectric structure of interfacial water entails a breakdown of the Debye ansatz that postulates the alignment of polarization with the protein electrostatic field. The tendencies to promote anomalous polarization are determined for each residue type and a particular kind of structural defect is shown to provide the predominant causal context.


Assuntos
Proteínas/química , Água/química , Animais , Humanos , Modelos Moleculares , Eletricidade Estática , Domínios de Homologia de src
2.
Eur Phys J E Soft Matter ; 36(6): 62, 2013 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-23797357

RESUMO

Ligands must displace water molecules from their corresponding protein surface binding site during association. Thus, protein binding sites are expected to be surrounded by non-tightly-bound, easily removable water molecules. In turn, the existence of packing defects at protein binding sites has been also established. At such structural motifs, named dehydrons, the protein backbone is exposed to the solvent since the intramolecular interactions are incompletely wrapped by non-polar groups. Hence, dehydrons are sticky since they depend on additional intermolecular wrapping in order to properly protect the structure from water attack. Thus, a picture of protein binding is emerging wherein binding sites should be both dehydrons rich and surrounded by easily removable water. In this work we shall indeed confirm such a link between structure and dynamics by showing the existence of a firm correlation between the degree of underwrapping of the protein chain and the mobility of the corresponding hydration water molecules. In other words, we shall show that protein packing defects promote their local dehydration, thus producing a region of "hot" interfacial water which might be easily removed by a ligand upon association.


Assuntos
Proteínas/química , Temperatura , Água/química , Sítios de Ligação , Ligação de Hidrogênio , Ligantes , Estrutura Terciária de Proteína , Proteínas/metabolismo , Proteína Supressora de Tumor p53/química , Proteína Supressora de Tumor p53/metabolismo
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