Unveiling differential gene co-expression networks and its effects on levodopa-induced dyskinesia.

Levodopa-induced dyskinesia (LID) refers to involuntary motor movements of chronic use of levodopa in Parkinson's disease (PD) that negatively impact the overall well-being of people with this disease. The molecular mechanisms involved in LID were investigated through whole-blood transcriptomic analysis for differential gene expression and identification of new co-expression and differential co-expression networks. We found six differentially expressed genes in patients with LID, and 13 in patients without LID. We also identified 12 co-expressed genes exclusive to LID, and six exclusive hub genes involved in 23 gene-gene interactions in patients with LID. Convergently, we identified novel genes associated with PD and LID that play roles in mitochondrial dysfunction, dysregulation of lipid metabolism, and neuroinflammation. We observed significant changes in disease progression, consistent with previous findings of maladaptive plastic changes in the basal ganglia leading to the development of LID, including a chronic pro-inflammatory state in the brain.

A perspective on research, diagnosis, and management of lysosomal storage disorders in Colombia.

Lysosomal storage diseases (LSDs) are a group of about 50 inborn errors of metabolism characterized by the lysosomal accumulation of partially or non-degraded molecules due to mutations in proteins involved in the degradation of macromolecules, transport, lysosomal biogenesis or modulators of lysosomal environment. Significant advances have been achieved in the diagnosis, management, and treatment of LSDs patients. In terms of approved therapies, these include enzyme replacement therapy (ERT), substrate reduction therapy, hematopoietic stem cell transplantation, and pharmacological chaperone therapy. In this review, we summarize the Colombian experience in LSDs thorough the evidence published. We identified 113 articles published between 1995 and 2019 that included Colombian researchers or physicians, and which were mainly focused in Mucopolysaccharidoses, Pompe disease, Gaucher disease, Fabry disease, and Tay-Sachs and Sandhoff diseases. Most of these articles focused on basic research, clinical cases, and mutation reports. Noteworthy, implementation of the enzyme assay in dried blood samples, led to a 5-fold increase in the identification of LSD patients, suggesting that these disorders still remain undiagnosed in the country. We consider that the information presented in this review will contribute to the knowledge of a broad spectrum of LSDs in Colombia and will also contribute to the development of public policies and the identification of research opportunities.

Head-to-head comparison of F-18 FDG PET/CT in radioidine refractory thyroid cancer patients with elevated versus suppressed TSH levels a pilot study.

INTRODUCTION: To perform a head-to-head comparison of the uptake pattern of F-18 fluorodeoxyglucose in positron emission computed tomography (FDG PET/CT) in radioiodine refractory thyroid carcinomas (RAIR) in the same patient under elevated TSH levels (eTSH) and suppressed TSH levels (sTSH). METHODS: FDG PET/CT studies were performed under two conditions: levothyroxine intake (sTSH) and 30 days after hormonal withdrawal (eTSH). SUVmax values and the number of lesions detected (local recurrence and metastases in cervical and distant lymph nodes, lungs and bone) where blindly evaluated. Blood serum TSH and Tg levels were obtained prior to both studies. FDG PET/CT imaging, neck ultrasound, biopsy and follow-up were considered the reference standard. RESULTS: Fifteen patients performed both eTSH and sTSH FDG PET/CT studies. Both were positive for metastases in 80% of the patients. eTSH FDG PET/CT studies did not reveal increased uptake (p = 0.0640) and did not demonstrate a higher number of lesions (p = 0.320) when compared to sTSH FDG PET/CT studies. There was no change in the clinical management of these patients. CONCLUSIONS: eTSH FDG PET/CT in patients with RAIR did not show more metastases in comparison to sTSH FDG PET/CT and there was no impact in clinical management of patients. Elevating TSH levels (whether by hormonal withdrawal or recombinant TSH) in patients being submitted to FDG PET/CT may not be necessary.

KRAS biomarker testing disparities in colorectal cancer patients in New Mexico.

INTRODUCTION: American Society of Clinical Oncology (ASCO) guidelines recommend that all patients with metastatic colorectal cancer (mCRC) receive KRAS testing to guide anti-EGFR monoclonal antibody treatment. The aim of this study was to assess for disparities in KRAS testing and mutational status. METHODS: The New Mexico Tumor Registry (NMTR), a population-based cancer registry participating in the National Cancer Institute's Surveillance, Epidemiology and End Results program, was queried to identify all incident cases of CRC diagnosed among New Mexico residents from 2010 to 2013. RESULTS: Six hundred thirty-seven patients were diagnosed with mCRC from 2010-2013. As expected, KRAS testing in Stage 4 patients presented the highest frequency (38.4%), though testing in stage 3 (8.5%), stage 2 (3.4%) and stage 1 (1.2%) was also observed. In those with metastatic disease, younger patients (≤ 64 years) were more likely to have had testing than patients 65 years and older (p < 0.0001). Patients residing in urban areas received KRAS testing more often than patients living in rural areas (p = 0.019). No significant racial/ethnic disparities were observed (p = 0.66). No significant differences were seen by year of testing. CONCLUSION: Age and geographic disparities exist in the rates of KRAS testing, while sex, race/ethnicity and the year tested were not significantly associated with testing. Further study is required to assess the reasons for these disparities and continued suboptimal adherence to current ASCO KRAS testing guidelines.

Diabetes susceptibility in Mayas: Evidence for the involvement of polymorphisms in HHEX, HNF4α, KCNJ11, PPARγ, CDKN2A/2B, SLC30A8, CDC123/CAMK1D, TCF7L2, ABCA1 and SLC16A11 genes.

Association of type 2 diabetes (T2D) with common variants in HHEX, HNF4α, KCNJ11, PPARγ, CDKN2A/2B, SLC30A8, CDC123/CAMK1D, TCF7L2, ABCA1 and SLC16A11 genes have been reported, mainly in populations of European and Asian ancestry and to a lesser extent in Latin Americans. Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (HNF4α), rs5219 (KCNJ11), rs1801282 (PPARγ), rs10811661 (CDKN2A/2B), rs13266634 (SLC30A8), rs12779790 (CDC123/CAMK1D), rs7903146 (TCF7L2), rs9282541 (ABCA1) and rs13342692 (SLC16A11) polymorphisms in the genetic background of Maya population to associate their susceptibility to develop T2D. This is one of the first studies designed specifically to investigate the inherited component of T2D in the indigenous population of Mexico. SNPs were genotyped by allelic discrimination method in 575 unrelated Maya individuals. Two SNPs rs10811661 and rs928254 were significantly associated with T2D after adjusting for BMI; rs10811661 in a recessive and rs9282541 in a dominant model. Additionally, we found phenotypical alterations associated with genetic variants: HDL to rs9282541 and insulin to rs13342692. In conclusion, these findings support an association of genetic polymorphisms to develop T2D in Maya population.

Homozygous missense mutation in MED25 segregates with syndromic intellectual disability in a large consanguineous family.

BACKGROUND: Intellectual disability (ID) is a highly heterogeneous condition affecting 2% of the population worldwide. In a field study conducted in a highly inbred area of Northeastern Brazil, we investigated a consanguineous family in which seven adults presented syndromic ID. METHODS: Genome-Wide Human SNP Array 6.0 (Affymetrix) microarray was used to determine regions of homozygosity-by-descent and whole exome sequencing (WES) was performed in one affected individual using Extended Nextera Rapid-Capture Exome and Illumina HiSeq2500. RESULTS: We found two regions with an logarithm of the odds (LOD) score of 3.234: a region spanning 4.0 Mb in 19q13.32-q13.33 and a pericentromeric 20 Mb area in chromosome 2 (2p12-q11.2). WES disclosed in the critical region of chromosome 19 a homozygous variant (c.418C>T, p.Arg140Trp) in Mediator complex subunit 25 (MED25), predicted as deleterious by PolyPhen-2, Provean, Mutation Taster and Sorting Intolerant From Tolerant (SIFT). MED25 is a component of the Mediator complex, involved in regulation of transcription of nearly all RNA polymerase II-dependent genes. Deleterious mutations in MED12, MED17 and MED23 have already been associated with ID. CONCLUSIONS: These findings demonstrate that the combination of field investigation of families in highly inbred regions with modern technologies is an effective way for identifying new genes associated with ID.

Análisis molecular de familias uruguayas con Enfermedad de Huntington / Molecular analysis of the Uruguayan families with Huntington’s Disease

Introducción: La Enfermedad de Huntington (EH) es un trastorno neurodegenerativo; autosómico dominante, con expresividad variable y penetrancia completa. La prevalencia estimada es entre 1-4 cada 100.000 habitantes. Es causada por expansión de tripletes CAG en el exón 1 del gen IT-15 que conduce a la síntesis de una proteína con una región de poliglutaminas expandidas que forman agregados en el núcleo celular induciendo a la apoptosis. Los alelos normales presentan un número menor a 26 tripletes CAG, y aquellos con más de 40 conducirán siempre a la enfermedad. Alelos de entre 26 a 36 repetidos se consideran normales “mutables” y de 36 a 39 repetidos generan un riesgo aumentado de desarrollar la enfermedad. Objetivo: Poner a punto el diagnóstico molecular en una población uruguaya, mediante la determinación del tamaño exacto de la mutación en personas afectadas o con sospecha clínica de EH, mediante el uso de técnicas de biología molecular. Métodos: Pacientes de la Policlínica de Enfermedad de Parkinson y Movimientos Anormales del Hospital de Clínicas. La determinación del número de repetidos se realizó mediante técnicas de amplificación del ADN por PCR y posterior análisis en geles de poliacrilamida y secuenciación. Resultados: Realizamos el diagnóstico molecular de 16 pacientes, 15 con un diagnóstico clínico previo, y uno asintomático. Se descartó el diagnóstico de EH en otros dos individuos analizados. Conclusiones: Hemos logrado la puesta a punto del estudio molecular para la enfermedad de EH por primera vez en nuestro país. Esta prueba es de gran utilidad como diagnóstico confirmatorio, etiológico o diferencial de EH.

Introduction: Huntington disease (HD) is a neurodegenerative disorder with an autosomal dominant inheritance mode, complete penetrance and variable clinical expressivity. The estimated prevalence is 1 to 4 per 100.000 individuals. It is caused by a CAG triplet expansion in exon 1 of the IT-15 gene which codes for a protein with an enlarged polyglutamine region. This leads to the formation of protein aggregates in the cell nucleus and induces apoptosis. Normal alleles show less than 26 CAG repeats, and those over 40 always lead to the disease. Alleles with 26 to 36 repeats are considered normal “mutable” alleles and those between 36 to 39, are considered in a gray zone with increased risk of developing the disease. Aims: To develop a diagnosis of HD in a uruguayan population and determine the exact size of the mutation in clinically affected subjects using molecular biology techniques. Methods: Patients were derived from Neurology Clinic of the “Hospital de Clínicas”. The determination of the CAG repeat number was done using polymerase chain reaction (PCR) technique, subsequent analysis on polyacrilamide gels and sequencing. Results: We performed the molecular diagnosis in 18 patients with clinical suspicion of HD. Fifteen of them had a previous clinical diagnosis and one had no symptoms. Besides, in two additional individuals this test allowed us to discard HD. Conclusions: A molecular diagnostic for HD disease was developed for the first time in our country. This test is of great clinical utility as a confirmatory, etiological, or differential diagnosis.

Factors determining penetrance in familial atypical haemolytic uraemic syndrome.

BACKGROUND: Inherited abnormalities of complement are found in ∼60% of patients with atypical haemolytic uraemic syndrome (aHUS). Such abnormalities are not fully penetrant. In this study, we have estimated the penetrance of the disease in three families with a CFH mutation (c.3643C>G; p. Arg1215Gly) in whom a common lineage is probable. 25 individuals have been affected with aHUS with three peaks of incidence-early childhood (n=6), early adulthood (n=11) and late adulthood (n=8). Eighteen individuals who have not developed aHUS carry the mutation. METHODS: We estimated penetrance at the ages of 4, 27, 60 and 70 years as both a binary and a survival trait using MLINK and Mendel. We genotyped susceptibility factors in CFH, CD46 and CFHR1 in affected and unaffected carriers. RESULTS AND CONCLUSIONS: We found that the estimates of penetrance at the age of 4 years ranged from <0.01 to 0.10, at the age of 27 years from 0.16 to 0.29, at the age of 60 years from 0.39 to 0.51 and at the age of 70 years from 0.44 to 0.64. We found that the CFH haplotype on the allele not carrying the CFH mutation had a significant effect on disease penetrance. In this family, we did not find that the CD46 haplotypes had a significant effect on penetrance.

Enfermedades genéticas en una población rural colombiana con discapacidad / Genetic disease in a disabled population from a Colombian rural area

La enfermedad genética, como causa de discapacidad, es un problema de salud real pero subestimado. Aún son insuficientes las intervenciones oportunas y adecuadas en pacientes con discapacidad de origen genético. El objetivo de este estudio fue determinar la prevalencia de enfermedad genética en una población discapacitada del área rural de Anapoima, Colombia. Se evaluaron 35 pacientes con diferentes tipos de discapacidad y sus familias. Los diagnósticos etiológicos de los pacientes se clasificaron en cinco categorías de acuerdo con la carga genética: categoría I (enfermedades monogénicas), II (enfermedades cromosómicas), III (enfermedades multifactoriales), IV (enfermedades con origen desconocido) y V (enfermedades ambientales). Una vez practicados los estudios de genética, se volvieron a clasificar bajo las mismas categorías. Antes de practicar los estudios de genética, las enfermedades se ubicaban, principalmente, en la categoría IV seguida de la II. Al finalizar el estudio, la categoría IV disminuyó y la categoría I aumentó de manera importante. Estos hallazgos evidencian que la anamnesis adecuada, el examen físico, el genograma y los exámenes básicos de genética, contribuyen a la detección de enfermedades genéticas, incluso en niveles de atención de baja complejidad en salud. Se evaluó, además, el grado de cumplimiento de las guías de manejo para síndrome de Down en estos pacientes, siendo inadecuado por cada ítem. El abordaje del paciente en situación de discapacidad requiere, entre otras cosas, la valoración y los estudios genéticos. El conocer la etiología permitirá mejor entendimiento y aceptación del paciente y su familia de su condición, planear estrategias de prevención y tratamiento adecuadas, y mejorar el proceso de toma de decisiones sobre reproducción en la familia.

Genetic diseases are a common cause of disability, but this fact is underestimated. Properly and opportune medical interventions on patients with these diseases are not enough yet. The aim of this study was to determine the prevalence of genetic disease in a disabled population from a Colombian rural area. Thirty five patients and their families with different chronic disabling conditions were evaluated. Each patient was assigned to one of five groups on the basis of the presence or absence of an underlying chronic medical condition and whether that condition had a genetic basis or susceptibility as follows: I category (monogenic diseases), II (chromosomal disorders), III (multifactorial diseases), IV (unknown etiology diseases or acquired disorders without genetic determinant), V (no preexisting chronic medical condition, no genetic disease basis). Once genetic evaluation was performed, the etiologic diagnoses were reclassified according those categories. Before genetic evaluation, the patients were categorized in the IV and II categories. After the genetic evaluation and genetics tests were done, the patients of IV category dropped while patients in I category raised. This demonstrates that right anamnesis, physical exam, complete family history tree and some basic genetics tests are required for proper diagnosis of genetic diseases, even in centers of primary care. We also asses the medical guidelines compliance for the Down syndrome in this population and this was unsatisfactory. Finally, we conclude that establishment of the genetic disease contributes to patients and the families in the understanding of their condition and also promotes better strategies of medical attention, according to the medical needs of this patients, including reproductive assessment.

Atenção em genética médica no sus: a experiência de um município de médio porte / Attention in medical genetics in the brazilian health system: the experience of a medium-sized municipality

Realizou-se estudo descritivo e exploratório da experiência em município de médio porte da implantação de ações na área da Genética, conjugando a análise dos documentos oficiais e de um questionário aplicado a 43 profissionais de nível superior da Estratégia Saúde da Família. Os dados obtidos foram analisados buscando obter respostas sobre como e por que foram realizadas determinadas estratégias de atenção à saúde na área da Genética Clínica e Comunitária. Tais ações foram classificadas em "educação permanente", "vigilância em saúde" e "ampliação do acesso à assistência". Os resultados revelaram que ainda é necessário estender as ações de educação permanente na área para profissionais da atenção primária, possibilitando assim promover a efetivação dessa porta de entrada do Sistema Único de Saúde para a área da Genética e o acesso a um cuidado integral em saúde.

We conducted a descriptive study on the experience of implementation of actions in the area of genetics in a medium-sized municipality, combining the analysis of official documents and a questionnaire administered to 43 university level professionals of the Family Health Strategy. The data were analyzed looking for answers about how and why certain health care strategies in the area of clinical and community genetics were performed. Such actions were classified as "continuing education", "health surveillance" and "enhanced access to care". The results showed that it is still necessary to extend the actions of continuing education in genetics for primary care professionals, promoting this gateway to the SUS also to the area of genetics, in order to allow full access to comprehensive health care.