Data on Sea turtle relative abundance in nearshore waters adjacent to the Mississippi River delta, Gulf of Mexico, United States.

We measured the relative abundance of sea turtles using standardized transect surveys conducted during the summer and fall of 2013 in neritic waters surrounding the Mississippi River delta in Louisiana, USA. Data comprise sea turtle locations, observation circumstances, and environmental covariates recorded at the beginning of each transect and at the time of each turtle observation. Turtles were recorded by species and size class, as well as location in the water column and the distance the turtle was from the transect line. Transects were performed on an 8.2 meter vessel with two observers atop a 4.5 meter elevated platform, with vessel speed standardized at ∼15 km/hr. These data are the first to describe relative abundance of sea turtles observed from small vessels in this region. Detection of turtles <45 cm SSCL and data detail are greater than aerial surveys. The data serve to inform resource managers and researchers regarding these protected marine species.

Habitat selection by Asiatic black bear (Ursus thibetanus) in Siran and Kaghan Valleys, Pakistan

Abstract Asiatic black bear is present in variety of habitats like broad-leaves and coniferous forests, extending form sea level to 4300m elevation and change their habitat for food purpose seasonally. The present study was conducted at Kaghan and Siran Valleys, District Mansehra, Khyber Pakhtunkhwa, Pakistan to assess habitat of black bear. Line transect method was used for observation of bear signs. Twelve meter circular radius plots were selected for the concern vegetations i.e. (trees, shrubs and herbs) and three to six plots were placed in each transect. At the result of sign survey, thirteen different categories of bear signs were recorded and encounter rate was calculated for each sign. A total of 1858 signs were observed during field surveys. Total (81%) coniferous species were recoded among trees, with the highest appearance of Pinus wallichiana (34.22%) and Spruce spp (27.76%), similarly broad leaves trees (18.56%) were also recoded from habitat plots. Most of the signs were encountered in bushy areas, whereas high number of Viburnum Spp (60.29%) was present. It is indicated that black bear prefers blend of Coniferous Trees, Viburnum and Ferns Species; probably because these plants provide enough food, protection, and meticulous shelter because more than 80% of habitat composed of these three species. Currently habitat destruction and increase in human population are the up-growing issues for wild animals (especially Asiatic black bear), which is highly sensitive to such problems. High levels of conservation efforts are recommended for the protection of black bear habitat and to avoid human interference in their territory.

Resumo O urso-negro asiático está presente em uma variedade de habitats, como folhas largas e florestas de coníferas, estendendo-se do nível do mar até 4.300 m de altitude e mudando seu habitat para fins alimentares sazonalmente. O presente estudo foi conduzido nos vales Kaghan e Siran, distrito de Mansehra, Khyber Pakhtunkhwa, Paquistão, para avaliar o habitat do urso preto. O método de transecto linear foi usado para a observação de sinais do urso. Parcelas de raio circular de 12 m foram selecionadas para a vegetação de preocupação, ou seja, árvores, arbustos e ervas, e 3 a 6 parcelas foram colocadas em cada transecto. No resultado da pesquisa de sinais, 13 categorias diferentes de sinais de urso foram registradas e a taxa de encontro foi calculada para cada sinal. Um total de 1858 sinais foi observado durante os levantamentos de campo. O total (81%) de espécies de coníferas foi recodificado entre as árvores, com maior aparecimento de Pinus wallichiana (34,22%) e Spruce spp (27,76%); árvores de folhas largas (18,56%) também foram recodificadas em parcelas de habitat. A maioria dos sinais foi encontrada em áreas com arbustos, enquanto um alto número de Viburnum spp (60,29%) estava presente. É indicado que o urso-negro prefere a mistura de árvores coníferas, espécies de viburnos e samambaias; provavelmente porque essas plantas fornecem alimento suficiente, proteção e abrigo meticuloso porque mais de 80% do habitat é composto por essas três espécies. Atualmente, a destruição do habitat e o aumento da população humana são questões crescentes para os animais selvagens, especialmente o urso-negro asiático, que é altamente sensível a esses problemas. Altos níveis de esforços de conservação são recomendados para a proteção do habitat do urso-negro e para evitar a interferência humana em seu território.

Habitat selection by Asiatic black bear (Ursus thibetanus) in Siran and Kaghan Valleys, Pakistan / Seleção de habitat pelo urso-negro asiático (Ursus thibetanus) nos vales Siran e Kaghan, Paquistão

Asiatic black bear is present in variety of habitats like broad-leaves and coniferous forests, extending form sea level to 4300m elevation and change their habitat for food purpose seasonally. The present study was conducted at Kaghan and Siran Valleys, District Mansehra, Khyber Pakhtunkhwa, Pakistan to assess habitat of black bear. Line transect method was used for observation of bear signs. Twelve meter circular radius plots were selected for the concern vegetation’s i.e. (trees, shrubs and herbs) and three to six plots were placed in each transect. At the result of sign survey, thirteen different categories of bear signs were recorded and encounter rate was calculated for each sign. A total of 1858 signs were observed during field surveys. Total (81%) coniferous species were recoded among trees, with the highest appearance of Pinus wallichiana (34.22%) and Spruce spp (27.76%), similarly broad leaves trees (18.56%) were also recoded from habitat plots. Most of the signs were encountered in bushy areas, whereas high number of Viburnum Spp (60.29%) was present. It is indicated that black bear prefers blend of Coniferous Trees, Viburnum and Ferns Species; probably because these plants provide enough food, protection, and meticulous shelter because more than 80% of habitat composed of these three species. Currently habitat destruction and increase in human population are the up-growing issues for wild animals (especially Asiatic black bear), which is highly sensitive to such problems. High levels of conservation efforts are recommended for the protection of black bear habitat and to avoid human interference in their territory.

O urso-negro asiático está presente em uma variedade de habitats, como folhas largas e florestas de coníferas, estendendo-se do nível do mar até 4.300 m de altitude e mudando seu habitat para fins alimentares sazonalmente. O presente estudo foi conduzido nos vales Kaghan e Siran, distrito de Mansehra, Khyber Pakhtunkhwa, Paquistão, para avaliar o habitat do urso preto. O método de transecto linear foi usado para a observação de sinais do urso. Parcelas de raio circular de 12 m foram selecionadas para a vegetação de preocupação, ou seja, árvores, arbustos e ervas, e 3 a 6 parcelas foram colocadas em cada transecto. No resultado da pesquisa de sinais, 13 categorias diferentes de sinais de urso foram registradas e a taxa de encontro foi calculada para cada sinal. Um total de 1858 sinais foi observado durante os levantamentos de campo. O total (81%) de espécies de coníferas foi recodificado entre as árvores, com maior aparecimento de Pinus wallichiana (34,22%) e Spruce spp (27,76%); árvores de folhas largas (18,56%) também foram recodificadas em parcelas de habitat. A maioria dos sinais foi encontrada em áreas com arbustos, enquanto um alto número de Viburnum spp (60,29%) estava presente. É indicado que o urso-negro prefere a mistura de árvores coníferas, espécies de viburnos e samambaias; provavelmente porque essas plantas fornecem alimento suficiente, proteção e abrigo meticuloso porque mais de 80% do habitat é composto por essas três espécies. Atualmente, a destruição do habitat e o aumento da população humana são questões crescentes para os animais selvagens, especialmente o urso-negro asiático, que é altamente sensível a esses problemas. Altos níveis de esforços de conservação são recomendados para a proteção do habitat do urso-negro e para evitar a interferência humana em seu território.

Habitat selection by Asiatic black bear (Ursus thibetanus) in Siran and Kaghan Valleys, Pakistan / Seleção de habitat pelo urso-negro asiático (Ursus thibetanus) nos vales Siran e Kaghan, Paquistão

Asiatic black bear is present in variety of habitats like broad-leaves and coniferous forests, extending form sea level to 4300m elevation and change their habitat for food purpose seasonally. The present study was conducted at Kaghan and Siran Valleys, District Mansehra, Khyber Pakhtunkhwa, Pakistan to assess habitat of black bear. Line transect method was used for observation of bear signs. Twelve meter circular radius plots were selected for the concern vegetations i.e. (trees, shrubs and herbs) and three to six plots were placed in each transect. At the result of sign survey, thirteen different categories of bear signs were recorded and encounter rate was calculated for each sign. A total of 1858 signs were observed during field surveys. Total (81%) coniferous species were recoded among trees, with the highest appearance of Pinus wallichiana (34.22%) and Spruce spp (27.76%), similarly broad leaves trees (18.56%) were also recoded from habitat plots. Most of the signs were encountered in bushy areas, whereas high number of Viburnum Spp (60.29%) was present. It is indicated that black bear prefers blend of Coniferous Trees, Viburnum and Ferns Species; probably because these plants provide enough food, protection, and meticulous shelter because more than 80% of habitat composed of these three species. Currently habitat destruction and increase in human population are the up-growing issues for wild animals (especially Asiatic black bear), which is highly sensitive to such problems. High levels of conservation efforts are recommended for the protection of black bear habitat and to avoid human interference in their territory.(AU)

O urso-negro asiático está presente em uma variedade de habitats, como folhas largas e florestas de coníferas, estendendo-se do nível do mar até 4.300 m de altitude e mudando seu habitat para fins alimentares sazonalmente. O presente estudo foi conduzido nos vales Kaghan e Siran, distrito de Mansehra, Khyber Pakhtunkhwa, Paquistão, para avaliar o habitat do urso preto. O método de transecto linear foi usado para a observação de sinais do urso. Parcelas de raio circular de 12 m foram selecionadas para a vegetação de preocupação, ou seja, árvores, arbustos e ervas, e 3 a 6 parcelas foram colocadas em cada transecto. No resultado da pesquisa de sinais, 13 categorias diferentes de sinais de urso foram registradas e a taxa de encontro foi calculada para cada sinal. Um total de 1858 sinais foi observado durante os levantamentos de campo. O total (81%) de espécies de coníferas foi recodificado entre as árvores, com maior aparecimento de Pinus wallichiana (34,22%) e Spruce spp (27,76%); árvores de folhas largas (18,56%) também foram recodificadas em parcelas de habitat. A maioria dos sinais foi encontrada em áreas com arbustos, enquanto um alto número de Viburnum spp (60,29%) estava presente. É indicado que o urso-negro prefere a mistura de árvores coníferas, espécies de viburnos e samambaias; provavelmente porque essas plantas fornecem alimento suficiente, proteção e abrigo meticuloso porque mais de 80% do habitat é composto por essas três espécies. Atualmente, a destruição do habitat e o aumento da população humana são questões crescentes para os animais selvagens, especialmente o urso-negro asiático, que é altamente sensível a esses problemas. Altos níveis de esforços de conservação são recomendados para a proteção do habitat do urso-negro e para evitar a interferência humana em seu território.(AU)

Mammals in São Paulo State: diversity, distribution, ecology, and conservation / Mamíferos do Estado de São Paulo: diversidade, distribuição, ecologia e conservação

Abstract Mammals are charismatic organisms that play a fundamental role in ecological functions and ecosystem services, such as pollination, seed dispersal, nutrient cycling, and pest control. The state of São Paulo represents only 3% of the Brazilian territory but holds 33% of its mammalian diversity. Most of its territory is dominated by agriculture, pastures, and urban areas which directly affect the diversity and persistence of mammals in the landscape. In addition, São Paulo has the largest port in Latin America and the largest offshore oil reservoir in Brazil, with a 600 km stretch of coastline with several marine mammal species. These human-made infrastructures affect the diversity, distribution, ecology, and the future of mammals in the state. Here, we answer five main questions: 1) What is the diversity of wild mammals in São Paulo state? 2) Where are they? 3) What is their positive and negative impact on human well-being? 4) How do mammals thrive in human-modified landscapes? 5) What is the future of mammals in the state? The state of São Paulo holds 255 species of native mammals, with four endemic species, two of them globally endangered. At least six species (two marsupials, Giant otter, Pampas deer, Brazilian dwarf brocket deer, and Giant armadillo) were extirpated from the state due to hunting and habitat loss. The intense human land use in the state forced many mammalian species to change their diet to cope with the intense fragmentation and agriculture. Large-scale monoculture has facilitated the invasion of exotic species such as wild boars (javali) and the European hare. Several "savanna-dwelling" species are expanding their ranges (Maned wolf, Brocket deer) over deforested areas and probably reflect changes towards a drier climate. Because the state has the largest road system, about 40,000 mammals from 33 species are killed per year in collisions causing an economic loss of 12 million dollars/year. The diversity of mammals is concentrated in the largest forest remnants of Serra do Mar and in the interior of the State, mainly in the regions of Ribeirão Preto and Jundiaí. Sampling gaps are concentrated throughout the interior of the state, particularly in the northwest region. Wild mammals play a fundamental role in many ecosystem services, but they can also be a concern in bringing new emergent diseases to humans. Although the taxonomy of mammals seems to be well known, we show that new species are continuously being discovered in the state. Therefore, continuous surveys using traditional and new technologies (eDNA, iDNA, drones), long-term population monitoring, investigation of the interface of human-wildlife conflict, and understanding of the unique ecosystem role played by mammals are future avenues for promoting sustainable green landscapes allied to human well-being in the state. The planting of forest or savanna corridors, particularly along with major river systems, in the plateau, controlling illegal hunting in the coastal areas, managing fire regimes in the Cerrado, and mitigating roadkill must be prioritized to protect this outstanding mammal diversity.

Resumo Os mamíferos são organismos carismáticos que desempenham um papel fundamental na função ecológica e nos serviços ecossistêmicos, como polinização, dispersão de sementes, ciclagem de nutrientes e controle de pragas. O Estado de São Paulo representa apenas 3% do território brasileiro, mas detém 33% da diversidade de mamíferos. A maior parte de seu território é dominado pela agricultura, pastagens e áreas urbanas que afetam diretamente a diversidade e a persistência dos mamíferos na paisagem. Além disso, São Paulo possui o maior porto da América Latina e o maior reservatório de petróleo costeiro do Brasil, com 600 km de extensão de litoral com diversas espécies de mamíferos marinhos. Essas infraestruturas afetam a diversidade, distribuição, ecologia e o futuro dos mamíferos no estado. Aqui, respondemos cinco perguntas principais: 1) Qual é a diversidade de mamíferos silvestres no Estado de São Paulo? 2) Onde eles ocorrem? 3) Qual é o seu impacto positivo e negativo no bem-estar humano? 4) Como os mamíferos persistem em paisagens modificadas pelo homem? 5) Qual é o futuro dos mamíferos no estado? O estado de São Paulo possui 255 espécies de mamíferos nativos, com quatro espécies endêmicas, duas delas globalmente ameaçadas de extinção. Pelo menos seis espécies (dois marsupiais, ariranha, veado-campeiro, veado-cambuta e tatu-canastra) foram extirpadas do estado devido à caça e perda de habitat. O intenso uso humano da terra no estado forçou muitas espécies de mamíferos a mudar sua dieta para lidar com a intensa fragmentação e agricultura. A monocultura em larga escala facilitou a invasão de espécies exóticas, como porcos selvagens (javaporco) e a lebre europeia. Várias espécies de áreas abertas estão expandindo suas áreas de distribuição (lobo-guará, veado-catingueiro) sobre áreas desmatadas e provavelmente refletem mudanças em direção a um clima mais seco. Como o estado possui o maior sistema rodoviário do Brasil, cerca de 40 mil mamíferos de 33 espécies são mortos por ano em colisões, causando um prejuízo econômico de 12 milhões de dólares/ano. A diversidade de mamíferos está concentrada nos maiores remanescentes florestais da Serra do Mar e no interior do Estado, principalmente nas regiões de Ribeirão Preto e Jundiaí. As lacunas amostrais estão concentradas em todo o interior do estado, principalmente na região noroeste. Os mamíferos silvestres desempenham um papel fundamental em muitos serviços ecossistêmicos, mas também podem ser uma preocupação em trazer novas doenças emergentes para as populações humanas. Embora a taxonomia de mamíferos pareça ser bem conhecida, mostramos que novas espécies estão sendo continuamente descobertas no estado. Portanto, pesquisas usando tecnologias tradicionais e novas (eDNA, iDNA, drones), monitoramento populacional de longo prazo, a investigação da interface do conflito homem-vida selvagem e a compreensão do papel único no ecossistema desempenhado pelos mamíferos são um caminho futuro para promover uma paisagem verde sustentável aliada ao bem-estar humano no estado. O plantio de corredores florestais ou de cerrado, principalmente junto aos principais sistemas fluviais, no planalto, o controle da caça ilegal nas áreas costeiras, o manejo dos regimes de fogo no Cerrado e a mitigação dos atropelamentos devem ser uma prioridade para proteger essa notável diversidade de mamíferos.

Common opossum population density in an agroforestry system in Bolivia

The common opossum, Didelphis marsupialis thrives near human settlements. Understanding its ecology could help planning management decisions about this species, especially in anthropogenic landscapes. Yet, there are no density estimations for this species throughout its distribution range in Bolivia. We estimated the density of D. marsupialis in a rural agricultural community, where agroforestry plantations and fallows cover most of the land. We counted individuals in line transects and used DISTANCE software to calculate density. We covered a total of 70.21 km in 143 night counts, obtaining 38 records of D. marsupialis. We estimated a density of 0.30 individuals ha-1 (SE = 0.062; range: 0.20 - 0.45 individuals ha-1), with a mean encounter rate of 0.54 individuals km-1. Encounter rate varied between habitats, with mean values of 0.20 in secondary forests and 0.64 in agroforestry plantations. Our density estimate is near the lower range of previously reported values for the common opossum in other countries. We argue that our results may reflect the response to the availability of food resources and predation pressure in agroforestry plantations. (AU)

Encounter rate and behavior of Alouatta guariba clamitans in the Ilha Grande State Park, Rio de Janeiro state, Brazil

Alouatta guariba clamitans Cabrera, 1940 is an endemic species of the Atlantic Forest that occurs from south Bahia, Brazil, extending south to the province of Misiones, Argentina. In Rio de Janeiro state, the species was classified as threatened, indicating that attention is needed for the conservation of this taxon. Additionally, an outbreak of yellow fever spread throughout the southeastern states of Brazil from January 2017 until March 2018 seriously threatening Rio de Janeiro populations of the species. Herein, we aimed to provide the first estimates of A. g. clamitans encounter rate, density, and population size in the Ilha Grande State Park (PEIG), which is part of the Atlantic Forest biome of Brazil. Data were collected in two different periods, the first between December 2003 and May 2005, and the second from August 2009 to May 2010, and information on encounter rates and behavior was collected to better understand aspects of species ecology. The estimated encounter rate in the first period through the distance sampling method was 0.04 ± 0.01 individuals per kilometer. Nine groups were recorded in the second period of the study, with 47 individuals along 3 km. Our estimates of encounter rate, density and population size were low and reinforces the need to initiate species monitoring and assess the impact that yellow fever outbreaks may have on PEIG populations. The results presented here can be a starting point to support future strategic actions for the species, to measure impacts and to the management of the species, and for a conservation program.(AU)

Encounter rate and behavior of Alouatta guariba clamitans in the Ilha Grande State Park, Rio de Janeiro state, Brazil

Alouatta guariba clamitans Cabrera, 1940 is an endemic species of the Atlantic Forest that occurs from south Bahia, Brazil, extending south to the province of Misiones, Argentina. In Rio de Janeiro state, the species was classified as threatened, indicating that attention is needed for the conservation of this taxon. Additionally, an outbreak of yellow fever spread throughout the southeastern states of Brazil from January 2017 until March 2018 seriously threatening Rio de Janeiro populations of the species. Herein, we aimed to provide the first estimates of A. g. clamitans encounter rate, density, and population size in the Ilha Grande State Park (PEIG), which is part of the Atlantic Forest biome of Brazil. Data were collected in two different periods, the first between December 2003 and May 2005, and the second from August 2009 to May 2010, and information on encounter rates and behavior was collected to better understand aspects of species’ ecology. The estimated encounter rate in the first period through the distance sampling method was 0.04 ± 0.01 individuals per kilometer. Nine groups were recorded in the second period of the study, with 47 individuals along 3 km. Our estimates of encounter rate, density and population size were low and reinforces the need to initiate species monitoring and assess the impact that yellow fever outbreaks may have on PEIG populations. The results presented here can be a starting point to support future strategic actions for the species, to measure impacts and to the management of the species, and for a conservation program.

Common opossum population density in an agroforestry system in Bolivia / Densidad de carachupas en un sistema agroforestal de Bolivia

La carachupa, Didelphis marsupialis prospera cerca de asentamientos humanos. Entender la ecología de una población puede ayudar a tomar decisiones de manejo de esta especie, especialmente en paisajes antropogénicos. Sin embargo, no existen estimaciones de la densidad de esta especie en todo su rango de distribución en Bolivia. Este estudio estimó la densidad de D. marsupialis en una comunidad agrícola, donde los sistemas agroforestales y barbechos cubren la mayoría de la tierra. Empleamos conteos en transectos lineales y usamos el programa DISTANCE para calcular la densidad. En total recorrimos 70.21 km en 143 noches de conteo y obtuvimos 38 registros de D. marsupialis. Estimamos una densidad de 0.30 individuos ha-1 (SE = 0.062; rango: 0.20 - 0.45 individuos ha-1) y una tasa de encuentro promedio de 0.54 individuos km-1. La tasa de encuentro varió entre hábitats, con valores promedio de 0.2 para bosque secundario y 0.64 para sistemas agroforestales. Nuestra estimación de densidad se encuentra cerca de los valores más bajos antes reportados para la especie en otros países. Creemos que nuestros resultados reflejan la respuesta a la disponibilidad de recursos en sistemas agroforestales y la presión de depredación en nuestro sitio de estudio.(AU)

The common opossum, Didelphis marsupialis thrives near human settlements. Understanding its ecology could help planning management decisions about this species, especially in anthropogenic landscapes. Yet, there are no density estimations for this species throughout its distribution range in Bolivia. We estimated the density of D. marsupialis in a rural agricultural community, where agroforestry plantations and fallows cover most of the land. We counted individuals in line transects and used DISTANCE software to calculate density. We covered a total of 70.21 km in 143 night counts, obtaining 38 records of D. marsupialis. We estimated a density of 0.30 individuals ha-1 (SE = 0.062; range: 0.20 - 0.45 individuals ha-1), with a mean encounter rate of 0.54 individuals km-1. Encounter rate varied between habitats, with mean values of 0.20 in secondary forests and 0.64 in agroforestry plantations. Our density estimate is near the lower range of previously reported values for the common opossum in other countries. We argue that our results may reflect the response to the availability of food resources and predation pressure in agroforestry plantations.(AU)

Rainforest and cloud forest Scolytodes (Curculionidae, Scolytinae, Hexacolini) from the Arthropods of La Selva inventory in Costa Rica: new species, new synonymy, new records.

Quantitative collecting efforts over the last several decades in Costa Rica have resulted in many new species of insects. The Arthropods of La Selva projects included collecting from a typical lowland Neotropical forest and up an altitudinal transect, and has provided many valuable samples of insects, spiders and mites potentially new to science. We describe 18 new species in the bark beetle genus Scolytodes Ferrari, 1867, 14 of which were collected during this project: S.angulus Jordal & Kirkendall, sp. nov., S.sufflatus Jordal & Kirkendall, sp. nov., S.squamatifrons Jordal & Kirkendall, sp. nov., S.comosus Jordal & Kirkendall, sp. nov., S.spatulatus Jordal & Kirkendall, sp. nov., S.seriatus Jordal & Kirkendall, sp. nov., S.profundus Jordal & Kirkendall, sp. nov., S.catinus Jordal & Kirkendall, sp. nov., S.fimbriatus Jordal & Kirkendall, sp. nov., S.sulcifrons Jordal & Kirkendall, sp. nov., S.planifrons Jordal & Kirkendall, sp. nov., S.porosus Jordal & Kirkendall, sp. nov., S.mundus Jordal & Kirkendall, sp. nov., S.callosus Jordal & Kirkendall, sp. nov., S.parvipilus Jordal & Kirkendall, sp. nov., S.plenus Jordal & Kirkendall, sp. nov., S.niger Jordal & Kirkendall, sp. nov., and S.simplex Jordal & Kirkendall, sp. nov. One species, Scolytodesminutissimus Schedl, 1952, is redescribed to match the holotype. We give new Costa Rica records for S.costabilis Wood, 1974, which is the correct name for S.obesus Wood, 1975 (syn. nov.). We report Costa Rica as a new country record for six species: Scolytodesclusiacolens Wood, 1967, S.crinalis Wood, 1978, S.culcitatus (Blandford, 1897), S.libidus Wood, 1978, S.reticulatus (Wood, 1961), and S.spadix (Blackman, 1943). From a closely related genus, we provide the first record for Central America (and only the second collection) of Pycnarthrumfulgidum Wood, 1977.

Mammals recorded in isolated remnants of Atlantic Forest in southern Goiás, Brazil / Mamíferos registrados em áreas isoladas de Mata Atlântica no sudoeste de Goiás

Abstract: Habitat fragmentation is one of the principal causes of the decline of species worldwide, and the Brazilian Atlantic Forest and Cerrado savanna biomes are among the most severely affected by this process. While highly fragmented, remnants of Atlantic Forest can still be found within the Cerrado domain of southern Goiás, where previous studies have revealed high levels of biodiversity. To inventory the mammalian species that occur in the region, two fragments of semideciduous Atlantic Forest were sampled between 2011 and 2016, using line transect surveys and camera trapping. A total of 1016 records were obtained of 30 mammal species, of which eleven are under some threat of extinction. The species richness recorded on this study was similar to or higher than the values reported from other areas of Goiás, which reinforces the importance of the maintenance of these remnants, located in private properties, for the conservation of the region's mammals.

Resumo: A fragmentação de hábitat é uma das principais causas do declínio das espécies e tanto a Mata Atlântica quanto o Cerrado são considerados um dos biomas mais afetados do mundo. As regiões sul e sudoeste de Goiás são intensamente fragmentadas, mas ainda abrigam alguns dos últimos remanescentes relictuais de Mata Atlântica dentro do domínio do Cerrado e estudos prévios revelaram uma alta biodiversidade. Com o objetivo de elaborar a lista de espécies de mamíferos que ocorrem para a região, dois fragmentos de florestas semideciduais da Mata Atlântica foram amostrados entre 2011 a 2016, através de transecções lineares e armadilhas fotográficas. Foram obtidos um total de 1.016 registros de 30 espécies de mamíferos, das quais onze estão ameaçadas de extinção. A alta riqueza registrada foi similar ou maior ao de outras áreas no Estado e reforça a importância da manutenção desses remanescentes localizados em propriedades particulares para a conservação das espécies.

ATLANTIC BIRDS: a data set of bird species from the Brazilian Atlantic Forest.

South America holds 30% of the world's avifauna, with the Atlantic Forest representing one of the richest regions of the Neotropics. Here we have compiled a data set on Brazilian Atlantic Forest bird occurrence (150,423) and abundance samples (N = 832 bird species; 33,119 bird individuals) using multiple methods, including qualitative surveys, mist nets, point counts, and line transects). We used four main sources of data: museum collections, on-line databases, literature sources, and unpublished reports. The data set comprises 4,122 localities and data from 1815 to 2017. Most studies were conducted in the Florestas de Interior (1,510 localities) and Serra do Mar (1,280 localities) biogeographic sub-regions. Considering the three main quantitative methods (mist net, point count, and line transect), we compiled abundance data for 745 species in 576 communities. In the data set, the most frequent species were Basileuterus culicivorus, Cyclaris gujanensis, and Conophaga lineata. There were 71 singletons, such as Lipaugus conditus and Calyptura cristata. We suggest that this small number of records reinforces the critical situation of these taxa in the Atlantic Forest. The information provided in this data set can be used for macroecological studies and to foster conservation strategies in this biodiversity hotspot. No copyright restrictions are associated with the data set. Please cite this Data Paper if data are used in publications and teaching events.

Assessing the population density of the spotted paca, Cuniculus paca, (Rodentia: Cuniculidae) on an Atlantic Forest island, southeastern Brazil

The spotted paca, Cuniculus paca (Linnaeus, 1766), is a Neotropical, opportunistic, frugivorous caviomorph rodent, that inhabits primarily broadleaf forests. We aimed to provide the first estimates of density of C. paca for the Ilha Grande, an island located in the Atlantic Rain Forest biome of Brazil. Density and population size were estimated using the total number of individuals observed along each trail through the program DISTANCE 7. Our estimates of density and population size reinforces the importance of the Ilha Grande as an important reservoir of the species. Therefore, the results presented herein can be a starting point to support future action plans for the species, making predictions regarding the ecosystem and management and conservation of the spotted paca. Furthermore, the results can be used as a surrogate for other regions in which the species occurs.

Assessing the population density of the spotted paca, Cuniculus paca, (Rodentia: Cuniculidae) on an Atlantic Forest island, southeastern Brazil

The spotted paca, Cuniculus paca (Linnaeus, 1766), is a Neotropical, opportunistic, frugivorous caviomorph rodent, that inhabits primarily broadleaf forests. We aimed to provide the first estimates of density of C. paca for the Ilha Grande, an island located in the Atlantic Rain Forest biome of Brazil. Density and population size were estimated using the total number of individuals observed along each trail through the program DISTANCE 7. Our estimates of density and population size reinforces the importance of the Ilha Grande as an important reservoir of the species. Therefore, the results presented herein can be a starting point to support future action plans for the species, making predictions regarding the ecosystem and management and conservation of the spotted paca. Furthermore, the results can be used as a surrogate for other regions in which the species occurs.(AU)

Carrion fly-derived DNA metabarcoding is an effective tool for mammal surveys: Evidence from a known tropical mammal community.

Metabarcoding of vertebrate DNA derived from carrion flies has been proposed as a promising tool for biodiversity monitoring. To evaluate its efficacy, we conducted metabarcoding surveys of carrion flies on Barro Colorado Island (BCI), Panama, which has a well-known mammal community, and compared our results against diurnal transect counts and camera trapping. We collected 1,084 flies in 29 sampling days, conducted metabarcoding with mammal-specific (16S) and vertebrate-specific (12S) primers, and sequenced amplicons on Illumina MiSeq. For taxonomic assignment, we compared blast with the new program protax, and we found that protax improved species identifications. We detected 20 mammal, four bird, and one lizard species from carrion fly metabarcoding, all but one of which are known from BCI. Fly metabarcoding detected more mammal species than concurrent transect counts (29 sampling days, 13 species) and concurrent camera trapping (84 sampling days, 17 species), and detected 67% of the number of mammal species documented by 8 years of transect counts and camera trapping combined, although fly metabarcoding missed several abundant species. This study demonstrates that carrion fly metabarcoding is a powerful tool for mammal biodiversity surveys and has the potential to detect a broader range of species than more commonly used methods.

Comparative landscape genetics of two frugivorous bats in a biological corridor undergoing agricultural intensification.

Agricultural intensification in tropical landscapes poses a new threat to the ability of biological corridors to maintain functional connectivity for native species. We use a landscape genetics approach to evaluate impacts of expanding pineapple plantations on two widespread and abundant frugivorous bats in a biological corridor in Costa Rica. We hypothesize that the larger, more mobile Artibeus jamaicensis will be less impacted by pineapple than the smaller Carollia castanea. In 2012 and 2013, we sampled 735 bats in 26 remnant forest patches surrounded by different proportions of forest, pasture, crops and pineapple. We used 10 microsatellite loci for A. jamaicensis and 16 microsatellite loci for C. castanea to estimate genetic diversity and gene flow. Canonical correspondence analyses indicate that land cover type surrounding patches has no impact on genetic diversity of A. jamaicensis. However, for C. castanea, both percentage forest and pineapple surrounding patches explained a significant proportion of the variation in genetic diversity. Least-cost transect analyses (LCTA) and pairwise G″st suggest that for A. jamaicensis, pineapple is more permeable to gene flow than expected, while as expected, forest is the most permeable land cover for gene flow of C. castanea. For both species, LCTA indicate that development may play a role in inhibiting gene flow. The current study answers the call for landscape genetic research focused on tropical and agricultural landscapes, highlights the value of comparative landscape genetics in biological corridor design and management and is one of the few studies of biological corridors in any ecosystem to implement a genetic approach to test corridor efficacy.

Biological traits, rather than environment, shape detection curves of large vertebrates in neotropical rainforests.

Line transect surveys are widely used in Neotropical rainforests to estimate the population abundance of medium- and large-sized vertebrates. The use of indices such as encounter rate has been criticized because the probability of animal detection may fluctuate due to the heterogeneity of environmental conditions among sites. In addition, the morphological and behavioral characteristics (biological traits) of species affect their detectability. In this study, we compared the extent to which environmental conditions and species' biological traits bias abundance estimates in terra firme rainforests in French Guiana. The selected environmental conditions included both physical conditions and forest structure covariates, while the selected biological traits included the morphological and behavioral characteristics of species. We used the distance sampling method to model the detection probability as an explicit function of environmental conditions and biological traits and implemented a model selection process to determine the relative importance of each group of covariates. Biological traits contributed to the variability of animal detectability more than environmental conditions, which had only a marginal effect. Detectability was best for large animals with uniform or disruptive markings that live in groups in the canopy top. Detectability was worst for small, solitary, terrestrial animals with mottled markings. In the terra firme rainforests that represent ~80% of the Amazonia and Guianas regions, our findings support the use of relative indices such as the encounter rate to compare population abundance between sites in species-specific studies. Even though terra firme rainforests may appear similar between regions of Amazonia and the Guianas, comparability must be ensured, especially in forests disturbed by human activity. The detection probability can be used as an indicator of species' vulnerability to hunting and, thus, to the risk of local extinction. Only a few biological trait covariates are required to correctly estimate the detectability of the majority of medium- and large-sized vertebrates. Thus, a biological trait model could be useful in predicting the detection probabilities of rare, uncommon, or localized species for which few data are available to fit the detection function.

Population density and primate conservation in the Noroeste Biosphere Reserve, Tumbes, Peru / Densidad poblacional y conservación de los primates de la Reserva de Biosfera del Noroeste, Tumbes, Perú

The Noroeste Biosphere Reserve (NBR) is home to at least 22 species of medium and large mammals including the primates Alouatta palliata aequatorialis and Cebus albifrons aequatorialis. Previous estimates of A. p. aequatorialis population density vary from 2.3-8.6 ind/km² in 1983 to 17-19 ind/km² in 2005 and 2006, respectively. While for C. a. aequatorialis there are no estimates of population density in the NBR. In order to calculate the population density estimates for both species we installed six transects in 10.5 km² within the Cerros de Amotape National Park (belonging to the NBR) from August 2012 to March 2013. Based on 112.3 km of transects we obtained a population density of 8.3 ± 3.6 ind/km² for A. p. aequatorialis. However, for the reduced number of Cebus albifrons aequatorialis sightings we were only able to calculate a group size from three to 12 individuals and an encounter rate of 0.3 ind/km. Even though A. p. aequatorialis has potentially increased in population density, it is not feasible to make comparisons with previous estimates in the same area because of the different employed methodologies and the lack of randomness in the data collection. We recommend a long-term monitoring plan, including C. a. aequatorialis which makes it a conservation priority for the NBR, this monitoring plan should include mitigation of potential threats such as illegal hunting and trapping for the pet trade.

La Reserva de Biósfera del Noroeste (RBN) alberga por lo menos 22 especies de mamíferos medianos y grandes entre las cuales se encuentran los primates Alouatta palliata aequatorialis y Cebus albifrons aequatorialis. Los estimados previos de la densidad poblacional de A. p. aequatorialis varían de 2.3‒8.6 ind/km² en 1983 a 17‒19 ind/km² en 2005 y 2006, respectivamente. Mientras que para C. a. aequatorialis no existen estimados poblacionales para la RBN. Para calcular la densidad poblacional de estas dos especies instalamos seis transectos lineales en 10.5 km² dentro del Parque Nacional Cerros de Amotape (perteneciente a la RBN) de agosto del 2012 a marzo del 2013. En base a 112.3 km de transectos se obtuvo una densidad poblacional de 8.3 ± 3.6 ind/km² para A. p. aequatorialis; sin embargo, por el reducido número de avistamientos de Cebus albifrons aequatorialis solo se pudo calcular el tamaño de grupo que varió de tres a 12 individuos y la tasa de encuentro de 0.3 ind/km. A pesar que la población del A. p. aequatorialis aparentemente ha aumentado, no es factible hacer comparaciones con los estimados anteriores debido a las diferentes metodologías empleadas y a la falta de aleatoriedad en la toma de datos. Recomendamos un plan de monitoreo a largo plazo, que incluya a C. a. aequatorialis como objeto y prioridad de conservación para la RBN, el cual debería incluir la mitigación de posibles amenazas como caza y captura para comercio de mascotas.

Small-scale temporal and spatial variability in the abundance of plastic pellets on sandy beaches: Methodological considerations for estimating the input of microplastics.

Microplastics such as pellets have been reported for many years on sandy beaches around the globe. Nevertheless, high variability is observed in their estimates and distribution patterns across the beach environment are still to be unravelled. Here, we investigate the small-scale temporal and spatial variability in the abundance of pellets in the intertidal zone of a sandy beach and evaluate factors that can increase the variability in data sets. The abundance of pellets was estimated during twelve consecutive tidal cycles, identifying the position of the high tide between cycles and sampling drift-lines across the intertidal zone. We demonstrate that beach dynamic processes such as the overlap of strandlines and artefacts of the methods can increase the small-scale variability. The results obtained are discussed in terms of the methodological considerations needed to understand the distribution of pellets in the beach environment, with special implications for studies focused on patterns of input.

New mammalian records in the Parque Nacional Cerros de Amotape, northwestern Peru

The Pacific Tropical Rainforest and Equatorial Dry Forest are found only in southern Ecuador and northern Peru, and are among the most poorly known ecosystems of South America. Even though these forests are protected in Parque Nacional Cerros de Amotape (PNCA), they are threatened by fragmentation because of farming and agriculture. The aim of this study was to determine the medium and large mammalian species richness, using transect census, camera trapping, and specimen bone collection. Nine transects were established and 21 camera trap stations were placed along 16 km² in three localities of PNCA, from August 2012 to April 2013. Total sampling effort was 215 km of transects and 4077 camera-days. We documented 22 species; including 17 with camera trapping, 11 with transect census, and 10 with specimen collection. Camera traps were the most effective method, and four species (Dasyprocta punctata, Cuniculus paca, Leopardus wiedii and Puma concolor) were documented only with this method. This comprised the first Peruvian record for Dasyprocta punctata, and the first record for the western slope of the Peruvian Andes for Cuniculus paca. Also, both specimen collections and sightings confirm the presence of Potos flavus, first record in the western slope of the Peruvian Andes. Panthera onca, Tremarctos ornatus and Saimiri sciureus are considered locally extinct, while several species are in need of further research. We highlight the importance of the high diversity of this rainforests and encourage local authorities to give the area the highest priority in conservation.

El Bosque Tropical de Pacífico y el Bosque Seco Ecuatorial, solo se encuentran desde el Sur de Ecuador hasta el Norte de Perú y están dentro de los ecosistemas más pobremente estudiados de Sudamérica. A pesar que estos bosques se encuentran protegidos dentro del Parque Nacional Cerros de Amotape (PNCA), están amenazados por fragmentación de hábitat debido a la agricultura y la ganadería. El objetivo de esta investigación fue determinar la riqueza de mamíferos medianos y grandes utilizando censos por transecto, cámaras trampa y colecta de especímenes. Se establecieron nueve transectos y se colocaron 21 estaciones con cámaras trampa en tres localidades del PNCA (16 km²) de agosto del 2012 a abril del 2013. El esfuerzo de muestreo acumulado fue 215 km de censos por transecto y 4077 cámara-días. Registramos 22 especies de mamíferos, 17 registradas con cámaras trampa, 11 con censos por transecto y diez con colecta de especímenes. El uso de cámaras trampa fue el método más efectivo y cuatro especies (Dasyprocta punctata, Cuniculus paca, Leopardus wiedii y Puma concolor) fueron registradas únicamente con este método. El registro de Dasyprocta punctata, es el primero para Perú y Cuniculus paca, el primer registro para la vertiente occidental de los Andes peruanos. Además, con avistamientos y colecta de especímenes se confirmó la presencia de Potos flavus para el PNCA siendo también el primer registro para la vertiente occidental de los Andes peruanos. A Panthera onca, Tremarctos ornatus y Saimiri sciureus se les considera localmente extintos, mientras que varias especies más necesitan mayor investigación para confirmar su presencia. Se resalta la importancia y alta diversidad de estos bosques y se recomienda a las autoridades locales darle prioridad en conservación.