Mutational and acquired carbapenem resistance mechanisms in multidrug resistant Pseudomonas aeruginosa clinical isolates from Recife, Brazil

An investigation was carried out into the genetic mechanisms responsible for multidrug resistance in nine carbapenem-resistant Pseudomonas aeruginosaisolates from different hospitals in Recife, Brazil. Susceptibility to antimicrobial agents was determined by broth microdilution. Polymerase chain reaction (PCR) was employed to detect the presence of genes encoding β-lactamases, aminoglycoside-modifying enzymes (AMEs), 16S rRNA methylases, integron-related genes and OprD. Expression of genes coding for efflux pumps and AmpC cephalosporinase were assessed by quantitative PCR. The outer membrane proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. The blaSPM-1, blaKPC-2 and blaGES-1 genes were detected in P. aeruginosaisolates in addition to different AME genes. The loss of OprD in nine isolates was mainly due to frameshift mutations, premature stop codons and point mutations. An association of loss of OprD with the overexpression of MexAB-OprM and MexXY-OprM was observed in most isolates. Hyper-production of AmpC was also observed in three isolates. Clonal relationship of the isolates was determined by repetitive element palindromic-PCR and multilocus sequence typing. Our results show that the loss of OprD along with overexpression of efflux pumps and β-lactamase production were responsible for the multidrug resistance in the isolates analysed.

Frecuencia de enzimas asociadas a sensibilidad disminuida a betalactámicos en aislados de enterobacterias, Caracas, Venezuela / Frequency of enzymes associated with reduced sensitivity to beta-lactamantibiotics in enterobacteria isolates, Caracas, Venezuela

Objective. To determine the frequency of enzymatic mechanisms associated with reduced sensitivity to broad-spectrum beta-lactam antibiotics in enterobacteria isolates obtained at hospital centers in Caracas, Venezuela.Methods. A cross-sectional study was conducted on enterobacteria isolated from patients at eight hospital centers in Caracas, Venezuela, from 15 October 2009 to 15 January 2010. The species were identified using conventional biochemical tests, and their susceptibility to antimicrobial drugs was assessed by antibiogram (Kirby-Bauer method), using the 2010 performance standards published by the Clinical and Laboratory Standards Institute. Beta-lactam-resistant genes were detected using an enhanced polymerase chain reaction assay.Results. Of 1 235 isolates, 207 (16.8%) exhibited resistance to third- and fourthgeneration cephalosporins, carbapenems, or both. They presented the following phenotypes: extended-spectrum beta-lactamase (ESBL), 93.8%; depressed AmpC, 4.3%; and carbapenemase, 1.9%. Further characterization of the first two phenotypes yielded the following breakdown of types: SHV, 36.7%; CTX-M-1 group, 22.3%; TEM, 21.7%; CTX-M-1 group with impermeability, 5.2%; two-enzyme combinations, 4.5%;CTX-M-2 group, 4.3%; PER, 3.4%; and KPC, 1.9%. The SHV type was predominant in the public hospital strains, whereas the CTX-M-1 group was most common in the strains from the private hospitals. Conclusions. Of the enzymatic mechanisms investigated, the SHV type was the most frequent, followed by the CTX-M-1 group and the TEM type. Also, a high percentageof type KPC was found. The research reported here is one of only a few multicenter studies that have been conducted in Venezuela to evaluate the frequency of this type of antimicrobial resistance mechanism, including phenotypical and molecular characterization...

Objetivo. Determinar la frecuencia de los mecanismos enzimáticos asociados a sensibilidad disminuida a los antibióticos betalactámicos de amplio espectro en aislados de enterobacteriasobtenidos de centros hospitalarios de Caracas, Venezuela. Métodos. Se realizó un estudio transversal con enterobacterias aisladas de pacientes de ocho centros hospitalarios de Caracas, Venezuela, desde el 15 de octubre de 2009 al 15 de enero de2010. La identificación se realizó mediante pruebas bioquímicas convencionales, y la susceptibilidada los antimicrobianos mediante antibiograma (Kirby-Bauer), según las normas de 2010 del Instituto de Estándares Clínicos y de Laboratorio. La detección de los genes de resistenciaa betalactámicos se realizó mediante amplificación por reacción en cadena de polimerasa. Resultados. De 1 235 aislados, 207 (16,8%) mostraron resistencia a cefalosporinas de terceray cuarta generación o a carbapenemes o a ambos. De esos, 93,8% presentaron fenotipo betalactamasa de espectro extendido (BLEE); 4,3%, fenotipo AmpC derreprimido, y 1,9%, fenotipocarbapenemasa. La caracterización de los dos primeros fenotipos determinó que 36,7% eran tipo SHV; 22,3%, grupo CTX-M-1; 21,7%, tipo TEM; 5,2%, grupo CTX-M-1 + impermeabilidad; 4,5%, combinación de dos enzimas; 4,3%, grupo CTX-M-2; 3,4%, tipo PER, y 1,9%, tipo KPC.Se observó un predominio del tipo SHV en las cepas obtenidas de hospitales públicos y del grupo CTX-M-1, en los privados. Conclusiones. De los mecanismos enzimáticos investigados, el tipo SHV fue el más frecuente,seguido del grupo CTX-M-1 y tipo TEM. Asimismo, se encontró un alto porcentaje de carbapenemasas tipo KPC. Este es uno de los pocos estudios multicéntricos realizados enVenezuela donde se evalúa la frecuencia de este tipo de mecanismo de resistencia a los antimicrobianos,incluida la caracterización fenotípica y molecular...

New Delhi metallo-beta-lactamase: A weapon for the newly emerging drug-resistant bacteria.

The world has seen the emergence of many micro-organisms in the recent past, which can curb human population with their newly built genetic make-up. The latest addition to this list of panic creating organisms is, bacteria encoding the gene for New Delhi metallo-beta-lactamase (NDM-1). NDM-1 is an enzyme that can hydrolyze and inactivate carbapenems, which are used as a last resort for the treatment of multi-resistant bacterial infections. Names of these bacteria were not found in the medical literature before December 2009, because of which it can take the credit of becoming a powerful emerging bacteria, which are difficult to treat. Besides Escherichia coli and Klebsiella pneumoniae, other bacterial strains have also expressed the gene for NDM-1, which are detected in many countries.

Development of TaqMan real-time polymerase chain reaction for the detection of the newly emerging form of carbapenem resistance gene in clinical isolates of Escherichia coli, Klebsiella pneumoniae, and Acinetobacter baumannii.

Purpose: The newly emerging form of the so-called New Delhi Metallo-beta-lactamases (NDM-1) has been reported recently from patients worldwide and broadly thought as a potential source for the major global health problem. Thus, it is important to study the epidemiology of the so-called NDM-1 harbouring bacteria to prevent its further spread and to place effective control measures. The present study describes the use of the real-time polymerase chain reaction (PCR) assay for the detection of the bla NDM-1 gene using TaqMan probes among clinical isolates. Materials and Methods: Clinical isolates of Escherichia coli (11 strains), Klebsiella pneumoniae (17 strains) and Acinetobacter baumannii (six strains) that were resistant to either of the carbapenems (meropenem or imipenem) were included in the study. The presence of carbapenemases in such strains was confirmed using the modified Hodge test. A real-time PCR assay was optimized for the detection of NDM-1 using a cloned synthetic gene fragment followed by testing of the clinical isolates. The findings were further confirmed using PCR and gene sequencing. Results: TaqMan probe assay displayed a good detection limit with analytical sensitivity of the assay up to 10 copies of bla NDM-1 gene per reaction. The isolates of E. coli and K. pneumoniae revealed narrow range crossing point values (Cp values) between (12-17) cycles (mean Cp value 14), indicating number of bla NDM-1 gene copies of 106-108. The wider range of Cp values (15-34) cycles with a higher mean Cp value (23.6) was observed in A. baumannii with number of bla NDM-1 gene copies of 103-108. Conclusions: The study demonstrates that real-time PCR assay based on TaqMan chemistry is a useful technique for the detection of bla NDM-1 harbouring clinical isolates of E. coli, K. pneumoniae and A. baumannii. The assay has great precision in measuring the number of bla NDM-1 gene copies per specimen of DNA.

Actividad in vitro de ertapenem frente a entrobacterias provenientes de la comunidad en siete ciudades de Colombia / In vitro Activity of Ertapenem Against Community Isolates of enterobacteriaceae from Seven Cities in Colombia

Objetivo. Evaluar los perfiles de sensibilidad in vitro de ertapenem y comparar su actividad con la de otros antibióticos de uso clínico para Enterobacteriaceas de la comunidad en Colombia. Materiales y métodos. Estudio descriptivo en el cual se recolectaron aislamientos clínicos de Enterobacterias provenientes de la comunidad de once hospitales de siete ciudades de Colombia. Los aislamientos se probaron con diferentes antibióticos –incluido el ertapenem– mediante la técnica de microdilución en caldo y la utilización de suspensiones bacterianas según las recomendaciones vigentes del Clinical and Laboratory Standards Institute (CLSI). En un grupo de bacterias con fenotipo compatible con la producción de β-lactamasas de espectro extendido (BLEE), se realizó la prueba confirmatoria de BLEE de Vitek®.Resultados. Se recolectaron 448 cepas; las sitios de aislamiento más frecuentes fueron la piel y los tejidos blandos (48 por ciento), el tracto genitourinario (27 por ciento) y las secreciones intraabdominales (16 por ciento). La sensibilidad dle ertapenem en todos los aislamientos fue de 100 por ciento. Los otros antibióticos presentaron comportamientos variables para cada especie bacteriana. Se resalta que Escherichia coli presentó 26 por ciento de resistencia a las quinolonas. De los 10 aislamientos de E. coli y 5 de Klebsiella con fenotipo sugestivo de producción de BLEE, 4 y 2, respectivamente, se confirmaron como BLEE positivos mediante la prueba confirmatoria. Conclusión. Los aislamientos de infecciones adquiridas en la comunidad son adecuadamente inhibidas por el ertapenem. Existen bacterias resistentes a los diferentes antibióticos, excepto a los carbapenems. Se evidencia la presencia de cepas productoras de BLEE en la comunidad que son inhibidas adecuadamente in vitro por el ertapenem